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Re: RGB Profiles Tool

Posted by Tiago Ferreira-2 on Jun 04, 2015; 2:50pm
URL: http://imagej.273.s1.nabble.com/RGB-Profiles-Tool-tp5013032p5013033.html

Hi Thorsten,

On Jun 4, 2015, at 08:56, Kolb, Thorsten <[hidden email]> wrote:
> I am using the RGB Profiles Tool (attached at the end) to plot line profiles of microscope
> Images. The tool works great, but I would like to be able to get the profiles updated when
> I draw a newline without having to load the macro again.

You could use Multichannel_Plot_Profile.bsh, a BAR[1] script:

In Fiji, subscribe to the BAR update site[2], then use BAR>Analysis>Multichannel
Plot Profile in e.g., the confocal-series image (File>Open Samples>).
If you are not using Fiji, you can download it directly from its documentation
page[3].

BARs are a collection of scripts that extend IJ built-in commands. Typically,
they are designed to accomplish one task only, so you will find variants of
the above script that perform multichannel live analysis of Z/T axis, or smooth
sampled data. You will find those in the respective menu[4].

-tiago

[1] https://github.com/tferr/Scripts#ij-bar
[2] http://fiji.sc/BAR#Installation
[3] https://github.com/tferr/Scripts/tree/master/Analysis#multichannel-plot-profile
[4] https://github.com/tferr/Scripts#analysis

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