Re: Parallel Iterative Deconvolution

Posted by Piotr Wendykier-2 on Jun 10, 2015; 8:32pm
URL: http://imagej.273.s1.nabble.com/Parallel-Iterative-Deconvolution-tp5013104p5013106.html

Hi Tim,

You have multiple versions of Parallel Colt in the plugins directory.
You need to remove other versions and keep only the one in
ParallelIterativeDeconvolution directory.

Piotr

On Wed, Jun 10, 2015 at 9:46 PM, Feinstein, Timothy N <[hidden email]> wrote:

> Hi all,
>
> I love Piotr Wendykier's deconvolution plugin for Fiji, but it stopped working today (see error message below).  Is it possible that something updated in Fiji (e.g., parallelcolt) and made it no longer compatible?  I am trying to create a simple workflow for non-imaging specialists.
>
> java.lang.NoSuchMethodError: edu.emory.mathcs.utils.ConcurrencyUtils.submit(Ljava/util/concurrent/Callable;)Ljava/util/concurrent/Future;
> at cern.colt.matrix.tfloat.impl.DenseFloatMatrix3D.getMaxLocation(Unknown Source)
> at edu.emory.mathcs.restoretools.iterative.psf.FloatPSF3D.<init>(Unknown Source)
> at edu.emory.mathcs.restoretools.iterative.psf.FloatPSFMatrix3D.<init>(Unknown Source)
> at edu.emory.mathcs.restoretools.iterative.AbstractFloatIterativeDeconvolver3D.<init>(Unknown Source)
> at edu.emory.mathcs.restoretools.iterative.mrnsd.MRNSDFloatIterativeDeconvolver3D.<init>(Unknown Source)
> at edu.emory.mathcs.restoretools.iterative.ParallelIterativeDeconvolution3D$MainPanel$DeconvolveButtonActionListener$1.run(Unknown Source)
> at java.lang.Thread.run(Thread.java:695)
>
> Thanks,
>
>
> Tim
>
> Timothy Feinstein, Ph.D.
> Research Scientist
> University of Pittsburgh Department of Developmental Biology
>
>
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