http://imagej.273.s1.nabble.com/importing-video-in-image-J-tp5013123p5013145.html
image sequence in ImageJ. You can then save it as avi. I also track cells
using TrackMate so I just use the image sequence file to track. I have been
using the method for the last 2 years so I am quite sure it works. :)
> I also use Quicktime Pro (version 7 as the later ones don’t have many
> features). I output tiff sequences from Fiji and then import the image
> sequence into Quicktime Pro so I can export as a movie using any of the
> codecs Apple offers. Dave
>
> On Jun 11, 2015, at 12:48 PM, Cammer, Michael <
[hidden email]
> <mailto:
[hidden email]>> wrote:
>
> As I've posted in the past, we use Quicktime Pro to output the movies to
> folders of single frame images. The software has options for a few formats
> and different fame sampling rates. We've used this for many formats
> including a project where someone used an iPhone to take 10 minute movies
> of mice in a box.
>
> =========================================================================
> Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical
> Center
> Cell: 914-309-3270 ** MY OFFICE HAS MOVED TO
> SKIRBALL 2nd FLOOR, Back right **
>
http://ocs.med.nyu.edu/microscopy &
http://microscopynotes.com/>
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> Jouan Julie
> Sent: Thursday, June 11, 2015 10:50 AM
> To:
[hidden email]<mailto:
[hidden email]>
> Subject: importing video in image J
>
> Hello,
>
> I would like to import a video file in Fiji/imageJ in order to track mice.
> I tried different video formats with several converters like :
>
> - .avi : The following message appears : "An error occurred reading the
> AVI file, unsupported compression : 34363248 'H264' " or even "Not an avi
> file" with an other converter.
>
> - .mov with QuickTime 7 Pro : I have a frame named "Bioformats import
> option", and when I click on "Ok", I have the following message "File is
> not a supported format, a reader plugin is not availaible, or it was not
> found". And howerver, I have the plugin "QT_Movie_Opener",
> "QT_Stack_Writer" and "QTVirtualStack".
>
> I also tried the solutions offered in this image J listserv like :
>
> -using FFMPEG (free video conversion software) but I can't load it -trying
> the FFMPEG plugin but it didn't change anything -using virtualdub and then
> exporting as a bmp stack then ImageJ/Fiji, but I can't open all the
> fragmented images in image J, I can only import them one by one
>
> Do you have any solution/suggestions to my problem to import a video in
> image J/Fiji ?
> It would be very helpful,
>
> Thank you,
> Julie
>
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> Professor of Molecular and Cell Biology
> Core Microscopy Facility Director
> University of Connecticut
> 91 N. Eagleville Rd.
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> 860-486-2200
>
>
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