http://imagej.273.s1.nabble.com/annotating-measurements-in-time-series-stacks-tp5013119p5013152.html
started with macro programming. I had fun understanding the commands and
modifying the code for my needs. I have been using image J for a while but
now I see more possibilities. Image J is great!
>Dear Leoncio,
>
>This macro code will add the info from a text file to individual frames.
>It expects one line per frame. Your image should be open and you select
>the text file in the macro. This can further automated if you would
>require.
>
>lines = split(File.openAsString(""), "\n");
>n = lines.length;
>for (i=0; i<n-1; i++) {
> values = split(lines[i], ",\r ");
> measurement = values[0];
> setSlice(i+1);
> run("Label...", "format=Text starting="+(i+1)+" interval=1 x=5 y=20
>font=18 text="+measurement+" range="+(i+1)+"-"+(i+1)+" use_text");
>}
>
>You can change the location of the text in the image by changing the x
>and y values above as well as the font size.
>
>Best wishes
>
>Kees
>
>
>Dr Ir K.R. Straatman
>Senior Experimental Officer
>Advanced Imaging Facility
>Centre for Core Biotechnology Services
>University of Leicester
>
http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite>/aif
>
>-----Original Message-----
>From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
>Vergara, Leoncio A.
>Sent: 11 June 2015 14:29
>To:
[hidden email]
>Subject: annotating measurements in time series stacks
>
>Good Morning
>
>I am doing intravital microscopy experiments in mice while simultaneously
>performing physiological measurements (temperature, etc). I can
>synchronize the recordings with the timing of the frame captures and
>generate a text list with the measurements, for example one line per
>frame. I would like to stamp these measurements in the frames, so that
>the parameter changes can be visualized together with the time stamp
>while playing back the time lapse recording.
>I was not able to find a ready function to do that with Image J. I am a
>physician-scientist, I have microscopy and imaging experience but limited
>programming skillsŠ and a presentation coming up soon. I was wondering if
>someone could point me in the right direction.
>
>Thanks in advance for your help
>
>Leoncio
>
>Leoncio Vergara MD MS
>Sr. Research Director
>Department of Surgery
>(Research Division)
>Baylor College of Medicine
>Houston, Texas
>
>
>
>
>
>
>
>
>
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