Posted by
Saalfeld, Stephan on
Jun 18, 2015; 1:07pm
URL: http://imagej.273.s1.nabble.com/Reslice-project-at-arbitrary-angle-in-a-3D-stack-tp5013198p5013201.html
Hey Christophe,
if you want to interactively slice it in arbotrary orientations, you
should use BigDataViewer
http://fiji.sc/BigDataViewerif you need a z-projection along an arbitrary axis, you can use
BigDataViewer's predecessor
http://fiji.sc/Interactive_Stack_Rotationinteractively rotate the stack and then press ENTER which renders the
full stack in this orientation. You can then use z-projection as usual.
Both plugins are the standard distribution of Fiji.
Best,
Stephan
On Thu, 2015-06-18 at 14:51 +0200, Michael Schmid wrote:
> On Jun 18, 2015, at 14:27, Christophe Leterrier wrote:
>
> > What is available now in ImageJ/Fiji for maoking projections along an
> > arbitrary x,y,z direction in a 3D stack? I found some discussions circa
> > 2009 mentioning VisBio from C. Rueden, but I'm wondering if there is
> > something more recent and integrated in ImageJ/Fiji (via 3D viewer maybe?)
>
> Hi Christophe,
>
> you can rotate a stack in x/y by Image>Transform>Rotate, then exchange x and z (or y and z) by Image>Stacks>Reslice, and rotate again. This should allow you to have you any arbitrary slice direction. It won't be 3D-interactive however.
>
> Michael
>
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