Re: 3D Viewer:

Posted by cromatina on Jun 25, 2015; 10:20am
URL: http://imagej.273.s1.nabble.com/3D-Viewer-tp5013277p5013280.html

Dear Ignacio,

I think I'm doing what you said: I open my original stack of images, and
also import > amira my .labels. Then I go to the plugins and call 3D
viewer. I think that when it opens, the two selections (original and
labels) show the same slice, but when I try to move them, it only moves one
of the selections...

I've tried to select both of them in Edit > Select but I can't...well, I
could once, but I've not been able to move them together anymore...

Suggestions are very welcome!

Best,
Andrea

2015-06-25 12:08 GMT+02:00 Ignacio Arganda-Carreras <
[hidden email]>:

> Dear Andrea,
>
> I think what you need to do is to load the two volumes (original image and
> labels) separately in ImageJ/Fiji and then call the 3D viewer. That way you
> can add them both to the viewer and visualize them together, change the
> transparency of the labels, etc.
>
> Best,
>
> ignacio
>
> On Thu, Jun 25, 2015 at 11:59 AM, Andrea Chicano <[hidden email]
> >
> wrote:
>
> > Dear ImageJ list,
> >
> > I am using 3D viewer to see my original 3D reconstruction together with
> my
> > segmented structures (.labels). But I am not able to move these two
> > selections together...Someone knows how can I overlap my original volume
> > with segmented areas?
> >
> > My aim is to be able to take snapshot of some slices showing the original
> > structures and also the original volume showing coloured structures
> > (segmented).
> >
> > Best regards,
> >
> > Andrea
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
>
>
> --
> Ignacio Arganda-Carreras, Ph.D.
> Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
> Bâtiment 2
> INRA Centre de Versailles-Grignon
> Route de St-Cyr (RD10)
> 78026 Versailles Cedex France
>
> Tel : [phone] - fax : [phone]
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> <http://biocomp.cnb.csic.es/~iarganda/index_EN.html>
>
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>

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