Re: 3D Viewer:

Posted by gankaku on Jun 25, 2015; 1:14pm
URL: http://imagej.273.s1.nabble.com/3D-Viewer-tp5013277p5013292.html

Dear Andrea,

if you add more than one reconstruction mesh and you accidentally rotate
one against another you can reset this movement with >Edit >Transformation
> Reset Transform and then you can fix the reconstruction with >Edit
>Transformation >Lock.

If you do this for all the reconstructions you have in your viewer window
you can align them and disable independent movements.

Hope this helps.
Kind regards,

Jan


Am 25.06.2015 05:24 schrieb "Andrea Chicano" <[hidden email]>:

> Dear Ignacio,
>
> I think I'm doing what you said: I open my original stack of images, and
> also import > amira my .labels. Then I go to the plugins and call 3D
> viewer. I think that when it opens, the two selections (original and
> labels) show the same slice, but when I try to move them, it only moves one
> of the selections...
>
> I've tried to select both of them in Edit > Select but I can't...well, I
> could once, but I've not been able to move them together anymore...
>
> Suggestions are very welcome!
>
> Best,
> Andrea
>
> 2015-06-25 12:08 GMT+02:00 Ignacio Arganda-Carreras <
> [hidden email]>:
>
> > Dear Andrea,
> >
> > I think what you need to do is to load the two volumes (original image
> and
> > labels) separately in ImageJ/Fiji and then call the 3D viewer. That way
> you
> > can add them both to the viewer and visualize them together, change the
> > transparency of the labels, etc.
> >
> > Best,
> >
> > ignacio
> >
> > On Thu, Jun 25, 2015 at 11:59 AM, Andrea Chicano <
> [hidden email]
> > >
> > wrote:
> >
> > > Dear ImageJ list,
> > >
> > > I am using 3D viewer to see my original 3D reconstruction together with
> > my
> > > segmented structures (.labels). But I am not able to move these two
> > > selections together...Someone knows how can I overlap my original
> volume
> > > with segmented areas?
> > >
> > > My aim is to be able to take snapshot of some slices showing the
> original
> > > structures and also the original volume showing coloured structures
> > > (segmented).
> > >
> > > Best regards,
> > >
> > > Andrea
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> >
> >
> > --
> > Ignacio Arganda-Carreras, Ph.D.
> > Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
> > Bâtiment 2
> > INRA Centre de Versailles-Grignon
> > Route de St-Cyr (RD10)
> > 78026 Versailles Cedex France
> >
> > Tel : [phone] - fax : [phone]
> > Website: http://sites.google.com/site/iargandacarreras/
> > <http://biocomp.cnb.csic.es/~iarganda/index_EN.html>
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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