Re: 3D Viewer:

Posted by cromatina on Jun 25, 2015; 2:54pm
URL: http://imagej.273.s1.nabble.com/3D-Viewer-tp5013277p5013296.html

Thanks a lot guys! You've helped me a lot! I was wasting a lot of time
trying to do something properly! The Edit > Transformation > Lock option
helped me to fix both of the stacks in the same position. And at the moment
(with your help) I have a movie with my results and segmented structures!!!

Best regards,

Andrea


2015-06-25 12:30 GMT+02:00 Ignacio Arganda-Carreras <
[hidden email]>:

> I see. If you don't select any of them, then you can change the view around
> them (move, rotate, etc).
>
> Is that what you want?
>
> On Thu, Jun 25, 2015 at 12:22 PM, Andrea Chicano <[hidden email]
> >
> wrote:
>
> > Dear Ignacio,
> >
> > I think I'm doing what you said: I open my original stack of images, and
> > also import > amira my .labels. Then I go to the plugins and call 3D
> > viewer. I think that when it opens, the two selections (original and
> > labels) show the same slice, but when I try to move them, it only moves
> one
> > of the selections...
> >
> > I've tried to select both of them in Edit > Select but I can't...well, I
> > could once, but I've not been able to move them together anymore...
> >
> > Suggestions are very welcome!
> >
> > Best,
> > Andrea
> >
> > 2015-06-25 12:08 GMT+02:00 Ignacio Arganda-Carreras <
> > [hidden email]>:
> >
> > > Dear Andrea,
> > >
> > > I think what you need to do is to load the two volumes (original image
> > and
> > > labels) separately in ImageJ/Fiji and then call the 3D viewer. That way
> > you
> > > can add them both to the viewer and visualize them together, change the
> > > transparency of the labels, etc.
> > >
> > > Best,
> > >
> > > ignacio
> > >
> > > On Thu, Jun 25, 2015 at 11:59 AM, Andrea Chicano <
> > [hidden email]
> > > >
> > > wrote:
> > >
> > > > Dear ImageJ list,
> > > >
> > > > I am using 3D viewer to see my original 3D reconstruction together
> with
> > > my
> > > > segmented structures (.labels). But I am not able to move these two
> > > > selections together...Someone knows how can I overlap my original
> > volume
> > > > with segmented areas?
> > > >
> > > > My aim is to be able to take snapshot of some slices showing the
> > original
> > > > structures and also the original volume showing coloured structures
> > > > (segmented).
> > > >
> > > > Best regards,
> > > >
> > > > Andrea
> > > >
> > > > --
> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > >
> > >
> > >
> > >
> > > --
> > > Ignacio Arganda-Carreras, Ph.D.
> > > Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
> > > Bâtiment 2
> > > INRA Centre de Versailles-Grignon
> > > Route de St-Cyr (RD10)
> > > 78026 Versailles Cedex France
> > >
> > > Tel : [phone] - fax : [phone]
> > > Website: http://sites.google.com/site/iargandacarreras/
> > > <http://biocomp.cnb.csic.es/~iarganda/index_EN.html>
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
>
>
> --
> Ignacio Arganda-Carreras, Ph.D.
> Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
> Bâtiment 2
> INRA Centre de Versailles-Grignon
> Route de St-Cyr (RD10)
> 78026 Versailles Cedex France
>
> Tel : [phone] - fax : [phone]
> Website: http://sites.google.com/site/iargandacarreras/
> <http://biocomp.cnb.csic.es/~iarganda/index_EN.html>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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