http://imagej.273.s1.nabble.com/3D-Segmentation-Using-Spheres-tp5013375p5013382.html
In the Fiji paper (Schindelin et al 2012) I wrote a script to segment cell nuclei and show them in 3D as spheres alongside the orthoslices of the confocal stack. May give you a head start.
> On Jul 1, 2015, at 3:08 AM, damien.schnebelen <
[hidden email]> wrote:
>
> Hi everybody,
>
> After the analysis of 2D datasets of images by sripting in Fiji (Python), I
> want to pass to a 3D representation. To do so, I plan to use the 3D viewer
> plugin or the volume plugin. Nonetheless, the final aim being segmentating
> the datasets using spheres in 3D, I want to know if such functions are
> available in those plugins or in other ones.
> If it is the case, may somebody give me the procedures to obtain this result
> ?
>
> Thanks by advance,
> Damien, student.
>
>
>
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