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Re: FIJI on Mac OS X

Posted by ctrueden on Jul 04, 2015; 12:58am
URL: http://imagej.273.s1.nabble.com/FIJI-on-Mac-OS-X-tp5013414p5013419.html

Hi Jordan,

For the moment, Fiji will not use the Java installed into /Library/Internet
Plugins, which is where the java.com installer puts the JRE. This issue
will be fixed later this summer, but for now, please install the JDK from
Oracle's site (linked from imagej.net/FAQ). Make sure Fiji reports 1.8.0_45
in your ImageJ status bar.

Regards,
Curtis
 On Jul 3, 2015 7:25 PM, "Jordan T Becker" <[hidden email]> wrote:

> Thanks Curtis,
>
> I saw this bug on either this list or the FIJI specific list. Checking the
> Mac OS System Preferences > Java Control Panel > Updates, I am up to date
> with _45. Although when FIJI opens it indicates that it's using Java
> 1.8.0_25.
>
> Cheers,
> Jordan
>
> Jordan T. Becker
> Research Fellow - Sherer Lab
> McArdle Cancer Biology Program
> University of Wisconsin - Madison
> [hidden email]
>
> Less invasions, more equations. - Hubert J. Farnsworth
> Whenever we propose a solution to a problem, we ought to try as hard as we
> can to overthrow our solution, rather than defend it. - Karl Popper
>
> On Fri, Jul 3, 2015 at 3:59 PM, Curtis Rueden <[hidden email]> wrote:
>
> > Hi Jordan,
> >
> > > The image opens line by line (slow) and flipping through three
> > > channels is also slow.
> >
> > There was a bug in Java with symptoms like this. Have you upgraded to the
> > latest version of Java? (1.8.0_45 as of this writing)
> >
> > Regards,
> > Curtis
> >
> > On Fri, Jul 3, 2015 at 10:58 AM, Jordan T Becker <[hidden email]>
> > wrote:
> >
> > > Hey,
> > >
> > > So I'm still have problems using FIJI on Mac OS X. FIJI opens, and will
> > > open an image file (.nd2 and .png). The image opens line by line (slow)
> > and
> > > flipping through three channels is also slow. When I bring up the
> > channels
> > > tool to colorize the grayscale channels, FIJI just freezes. I click the
> > > drop down in the channels tool, its slow to reveal the options, then
> > when I
> > > click color, FIJI no longer responds.
> > >
> > > I noticed it a week ago. It doesn't do this with the lifeline version
> > from
> > > November 2014. I have removed all instances of FIJI and downloaded the
> > most
> > > recent FIJI with ImageJ2.0.31. I've tried both the "no JRE" and MacOSX
> > > versions. I am running Java 8, so perhaps there are still some bugs
> > there.
> > >
> > > I haven't had a hardware problem. With previous FIJI iterations, just a
> > > couple months ago I could use FIJI with multi-GB .nd2 files to process,
> > > analyze, and make movies. Now it won't even change colors on 10MB
> files.
> > >
> > > Anyone else?
> > > Jordan
> > >
> > > Sherer Lab
> > > UW-Madison
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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