Thanks to John, I checked what was actually in the Library/JVM. It was
1.8.0_25 despite the Java Console indicating it was up to date with _45. I
in the status bar. Getting slightly better behavior loading images but the
I can crop, measure, subtract background, adjust B&C, etc. But opening the
still causes the application to freeze. Very odd. I'll keep testing, the
Jordan T. Becker
Less invasions, more equations. - Hubert J. Farnsworth
can to overthrow our solution, rather than defend it. - Karl Popper
> Just a followup. I noticed that when I copied and pasted the text of the
> apple script that the commands had been bold and were converted to
> markdown. Remove the asterisks around 'do shell script', 'quit', and 'me'.
> Sorry for the formatting issues.
>
> I put a screenshot of the launcher code here:
>
>
>
https://github.com/jrminter/OSImageAnalysis/blob/master/images/launcher-applet-code.png>
>
> John
>
> On Fri, Jul 3, 2015 at 8:14 PM, Jordan T Becker <
[hidden email]>
> wrote:
>
> > Thanks Curtis,
> >
> > I saw this bug on either this list or the FIJI specific list. Checking
> the
> > Mac OS System Preferences > Java Control Panel > Updates, I am up to date
> > with _45. Although when FIJI opens it indicates that it's using Java
> > 1.8.0_25.
> >
> > Cheers,
> > Jordan
> >
> > Jordan T. Becker
> > Research Fellow - Sherer Lab
> > McArdle Cancer Biology Program
> > University of Wisconsin - Madison
> >
[hidden email]
> >
> > Less invasions, more equations. - Hubert J. Farnsworth
> > Whenever we propose a solution to a problem, we ought to try as hard as
> we
> > can to overthrow our solution, rather than defend it. - Karl Popper
> >
> > On Fri, Jul 3, 2015 at 3:59 PM, Curtis Rueden <
[hidden email]> wrote:
> >
> > > Hi Jordan,
> > >
> > > > The image opens line by line (slow) and flipping through three
> > > > channels is also slow.
> > >
> > > There was a bug in Java with symptoms like this. Have you upgraded to
> the
> > > latest version of Java? (1.8.0_45 as of this writing)
> > >
> > > Regards,
> > > Curtis
> > >
> > > On Fri, Jul 3, 2015 at 10:58 AM, Jordan T Becker <
[hidden email]>
> > > wrote:
> > >
> > > > Hey,
> > > >
> > > > So I'm still have problems using FIJI on Mac OS X. FIJI opens, and
> will
> > > > open an image file (.nd2 and .png). The image opens line by line
> (slow)
> > > and
> > > > flipping through three channels is also slow. When I bring up the
> > > channels
> > > > tool to colorize the grayscale channels, FIJI just freezes. I click
> the
> > > > drop down in the channels tool, its slow to reveal the options, then
> > > when I
> > > > click color, FIJI no longer responds.
> > > >
> > > > I noticed it a week ago. It doesn't do this with the lifeline version
> > > from
> > > > November 2014. I have removed all instances of FIJI and downloaded
> the
> > > most
> > > > recent FIJI with ImageJ2.0.31. I've tried both the "no JRE" and
> MacOSX
> > > > versions. I am running Java 8, so perhaps there are still some bugs
> > > there.
> > > >
> > > > I haven't had a hardware problem. With previous FIJI iterations,
> just a
> > > > couple months ago I could use FIJI with multi-GB .nd2 files to
> process,
> > > > analyze, and make movies. Now it won't even change colors on 10MB
> > files.
> > > >
> > > > Anyone else?
> > > > Jordan
> > > >
> > > > Sherer Lab
> > > > UW-Madison
> > > >
> > > > --
> > > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > > >
> > >
> > > --
> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > >
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>