Aha, so that is what happened to me today. I tried merging a composite and had to hard-reboot my Mac. Fiji/ImageJ never froze like that before. Oddly it seemed like an isolated incident, as I did a lot of other work with LUTs and composites today.
) to replace my current Fiji with the continuous release there. Guilherme, I do not know enough about your situation to say whether that will help you as well but it looks like something to try.
> On Jul 3, 2015, at 11:53 PM, Jordan T Becker <
[hidden email]> wrote:
>
> Thanks to John, I checked what was actually in the Library/JVM. It was
> 1.8.0_25 despite the Java Console indicating it was up to date with
> _45. I downloaded _45 and FIJI (continuous release - MacOS X dmg) is
> showing _45 in the status bar. Getting slightly better behavior
> loading images but the application still freezes when I switch between color/composite/grayscale.
> I can crop, measure, subtract background, adjust B&C, etc. But opening
> the channels tool and using that drop down to select
> color/composite/grayscale still causes the application to freeze. Very
> odd. I'll keep testing, the trouble of course is that the console won't log during a freeze...
>
> Jordan
>
> Jordan T. Becker
> Research Fellow - Sherer Lab
> McArdle Cancer Biology Program
> University of Wisconsin - Madison
>
[hidden email]
>
> Less invasions, more equations. - Hubert J. Farnsworth Whenever we
> propose a solution to a problem, we ought to try as hard as we can to
> overthrow our solution, rather than defend it. - Karl Popper
>
> On Fri, Jul 3, 2015 at 8:08 PM, John Minter <
[hidden email]> wrote:
>
>> Just a followup. I noticed that when I copied and pasted the text of
>> the apple script that the commands had been bold and were converted
>> to markdown. Remove the asterisks around 'do shell script', 'quit', and 'me'.
>> Sorry for the formatting issues.
>>
>> I put a screenshot of the launcher code here:
>>
>>
>>
https://github.com/jrminter/OSImageAnalysis/blob/master/images/launch>> er-applet-code.png
>>
>>
>> John
>>
>> On Fri, Jul 3, 2015 at 8:14 PM, Jordan T Becker <
[hidden email]>
>> wrote:
>>
>>> Thanks Curtis,
>>>
>>> I saw this bug on either this list or the FIJI specific list.
>>> Checking
>> the
>>> Mac OS System Preferences > Java Control Panel > Updates, I am up to
>>> date with _45. Although when FIJI opens it indicates that it's using
>>> Java 1.8.0_25.
>>>
>>> Cheers,
>>> Jordan
>>>
>>> Jordan T. Becker
>>> Research Fellow - Sherer Lab
>>> McArdle Cancer Biology Program
>>> University of Wisconsin - Madison
>>>
[hidden email]
>>>
>>> Less invasions, more equations. - Hubert J. Farnsworth Whenever we
>>> propose a solution to a problem, we ought to try as hard as
>> we
>>> can to overthrow our solution, rather than defend it. - Karl Popper
>>>
>>> On Fri, Jul 3, 2015 at 3:59 PM, Curtis Rueden <
[hidden email]> wrote:
>>>
>>>> Hi Jordan,
>>>>
>>>>> The image opens line by line (slow) and flipping through three
>>>>> channels is also slow.
>>>>
>>>> There was a bug in Java with symptoms like this. Have you upgraded
>>>> to
>> the
>>>> latest version of Java? (1.8.0_45 as of this writing)
>>>>
>>>> Regards,
>>>> Curtis
>>>>
>>>> On Fri, Jul 3, 2015 at 10:58 AM, Jordan T Becker
>>>> <
[hidden email]>
>>>> wrote:
>>>>
>>>>> Hey,
>>>>>
>>>>> So I'm still have problems using FIJI on Mac OS X. FIJI opens, and
>> will
>>>>> open an image file (.nd2 and .png). The image opens line by line
>> (slow)
>>>> and
>>>>> flipping through three channels is also slow. When I bring up the
>>>> channels
>>>>> tool to colorize the grayscale channels, FIJI just freezes. I
>>>>> click
>> the
>>>>> drop down in the channels tool, its slow to reveal the options,
>>>>> then
>>>> when I
>>>>> click color, FIJI no longer responds.
>>>>>
>>>>> I noticed it a week ago. It doesn't do this with the lifeline
>>>>> version
>>>> from
>>>>> November 2014. I have removed all instances of FIJI and downloaded
>> the
>>>> most
>>>>> recent FIJI with ImageJ2.0.31. I've tried both the "no JRE" and
>> MacOSX
>>>>> versions. I am running Java 8, so perhaps there are still some
>>>>> bugs
>>>> there.
>>>>>
>>>>> I haven't had a hardware problem. With previous FIJI iterations,
>> just a
>>>>> couple months ago I could use FIJI with multi-GB .nd2 files to
>> process,
>>>>> analyze, and make movies. Now it won't even change colors on 10MB
>>> files.
>>>>>
>>>>> Anyone else?
>>>>> Jordan
>>>>>
>>>>> Sherer Lab
>>>>> UW-Madison
>>>>>
>>>>> --
>>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>>>
>>>>
>>>> --
>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>>
>>>
>>> --
>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
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