http://imagej.273.s1.nabble.com/3D-Viewer-Animation-s-transparency-when-rotating-tp5013360p5013478.html
> Hi guys!
>
> I have the same problem of Maria. My segmented areas look transparent in
> some regions depending on the angle of visualization. I have not been able
> to apply Reslice command to make the spacing between stacks smaller. Could
> someone help me to find Reslice command, please?
>
> Thanks!
>
> 2015-06-30 18:11 GMT+02:00 Curtis Rueden <
[hidden email]>:
>
> > Hi Maria,
> >
> > > When my object rotates, the animation goes transparent in some
> > > sections (here I'm able to see the internal layers) and opaque in
> > > others.
> >
> > The differences in transparency are an artifact of how the 3D Viewer
> > generates its volume visualization. It is actually a series of
> > semi-transparent slices oriented at the closest angle to "top down" from
> > the camera. You can see this most dramatically if you:
> >
> > A) visualize an image stack with very few slices, such as the Mitosis
> > sample
> > B) orient the volume at an edge or corner, then rotate back and forth
> > across the border
> >
> > One way to minimize the discrepancy is to use the Reslice command with
> > smaller output spacing, and "Avoid interpolation" unchecked. As a rule of
> > thumb: the closer your Z resolution is to your X and Y resolution, the
> less
> > of a discrepancy there will be.
> >
> > You could also try other 3D visualization solutions with your data, such
> as
> > the BigDataViewer [1], Volume Viewer [2], or Icy [3].
> >
> > Regards,
> > Curtis
> >
> > [1]
http://imagej.net/BigDataViewer> > [2]
http://imagej.net/Volume_Viewer> > [3]
http://imagej.net/Icy> >
> >
> > On Tue, Jun 30, 2015 at 9:43 AM, mduenas <
[hidden email]> wrote:
> >
> > > Hello all,
> > >
> > > I'm currently using 3D Viewer and I'm having trouble visualizing the
> > > animation of my object. When my object rotates, the animation goes
> > > transparent in some sections (here I'm able to see the internal layers)
> > and
> > > opaque in others. Is there a way to have the animation just be were it
> > goes
> > > transparent, rather than flashing back and forth?
> > >
> > > Thank you,
> > >
> > > Maria
> > >
> > >
> > >
> > > --
> > > View this message in context:
> > >
> >
>
http://imagej.1557.x6.nabble.com/3D-Viewer-Animation-s-transparency-when-rotating-tp5013360.html> > > Sent from the ImageJ mailing list archive at Nabble.com.
> > >
> > > --
> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > >
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>