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Re: In need of help with a Fiji segmentation project!

Posted by ctrueden on Jul 14, 2015; 9:04pm
URL: http://imagej.273.s1.nabble.com/In-need-of-help-with-a-Fiji-segmentation-project-tp5013556p5013561.html

Hi Amber,

> I need to find a method to accurately "crop" or section the breast
> from the background and the pectoral muscle without manually having to
> go in and use the drawing tool to section it off.

Could you please post a sample image (e.g., share a link via Dropbox),
along with a cropped or otherwise annotated version showing your desired
result?

Regards,
Curtis

On Tue, Jul 14, 2015 at 9:19 AM, Bbnation1234 <[hidden email]>
wrote:

> Hi everyone! I am new to Fiji and this is my first time using a
> photo-editing
> program aside from some basic Photoshop. I just recently joined a research
> group, and I wont go into exact details of what it entails but I am working
> on a project with MLO mammogram images on Fiji. The photos show a black
> background, the actual breast material, and a section of the pectoral
> muscle. I need to find a method to accurately "crop" or section the breast
> from the background and the pectoral muscle without manually having to go
> in
> and use the drawing tool to section it off. (Like making a mask for it and
> cropping the other sections out so we are only left with the important
> breast part.) I also need this method to work when applied to a large file
> of different mammogram images.
>
> So far I have been playing around with the Trainable Weka Segmentation
> plugin, and I haven't quite gotten the image segmented like I need to. If
> anyone could offer any kind of advice or help me in any way, it would be
> greatly appreciated! I am sorry for any incorrect terminology, but like I
> said previously, I am new to all this!
>
> Please dont hesitate to ask for any clarification if its needed! Thanks so
> much for taking the time to read my post!
>
>
>
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