The runMacro command doesn't "see" the ROI manager

Posted by Avital Steinberg on Jul 15, 2015; 2:42pm
URL: http://imagej.273.s1.nabble.com/The-runMacro-command-doesn-t-see-the-ROI-manager-tp5013572.html

Hi,
I'm running a program which has to run in batch mode, and I am using an
additional macro by calling runMacro. The problem is that within the macro,
the number of ROIs in the ROI manager is zero, while before and after
running the macro, there are ROIs in the ROI manager. The problem is that
the macro doesn't "see" the ROI manager.

This happens only in the batch mode, but when I try to set the batch mode
to false only for this part of the program, it doesn't solve the problem. I
tried explicitly opening the image with the ROIs and using the command
"from ROI manager" to solve this problem, but the problem wasn't solved.

Does anyone have any idea how to solve this problem?

Thanks,
Avital

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