Reading 3D Histech digital slides (.mrxs format)

Posted by Ofra Golani on
URL: http://imagej.273.s1.nabble.com/Reading-3D-Histech-digital-slides-mrxs-format-tp5013639.html

Hi,

Is there a way to open in ImageJ digital slides acquired using 3D Histech digital scanner.
The files are of .mrxs format which accompanies by a folder of many .dat files.

We now use Panoramic Viewer to export each slide independently into tiled tif file, because Panoramic Viewer export cannot be batched.
As we need to run image analysis on many slides the export step is very time-consuming and we want to avoid it.

Thanks,
Ofra Golani

BioImaging Analyst
Biological Services Department
Weizmann Institute of Science
Tel: [phone]
[hidden email]
http://wws.weizmann.ac.il/Biological_Services/bioinformatics-about
http://wws.weizmann.ac.il/vet/IC/content/bulletin-board


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