Stitching/Registration across z stacks

Posted by sumeerbrar on Aug 10, 2015; 3:22pm
URL: http://imagej.273.s1.nabble.com/Stitching-Registration-across-z-stacks-tp5013975.html

Hi all. I have a series of serially sectioned images of a mouse brain that I stitched in the XY plane but are each in a slightly different Z plane. How would I go about stitching these images together? I need to stitch them, not simply stack them. Thanks.