I just uploaded these releases. The new versions should all be available
through the updater now! Let us know if there are any problems.
> Hi,
>
> Is the update supposed to be automatically included in Fiji? I see that the
> IJ updater still does not install it (my imagscience is still 2.5.0).
>
> I saw that an update to NeuronJ is available and necessary for the new
> imagescience.jar, so I have to be sure which version I'm using.
>
> Thanks,
>
> Christophe
>
> On Sat, Aug 22, 2015 at 11:53 AM, Erik Meijering <
>
[hidden email]
> > wrote:
>
> > Dear TransformJ users,
> >
> > TransformJ 4.0.0 is now available (
> >
http://www.imagescience.org/meijering/software/transformj/) for ImageJ
> > users and will soon also appear in the Fiji distribution.
> >
> > It is a long-awaited major update. So long, in fact, that in the meantime
> > many of you probably got used to the shortcomings of the package and
> found
> > ways to work around them. Needless to say these work-arounds will no
> longer
> > work with the new version, so you may need to update your code/macros a
> bit.
> >
> > Apart from some cosmetic changes the most important fundamental change is
> > that the Affine and Rotate plugins are now able to properly work with
> image
> > stacks having anisotropic voxels. This means you no longer need to first
> > resample your data to isotropic voxels (if this was part of your pipeline
> > you will need to remove that step). The plugins offer the possibility to
> > either sample the transformed image on the same grid (same anisotropy) as
> > the input image (this is the default mode) or to resample the stack
> > isotropically while transforming (an option to be selected by the user).
> >
> > Even though this means TransformJ now finally works the way it should
> have
> > from the beginning, perhaps some of you would like to keep the old
> behavior
> > of the plugins. This is possible. The only thing you need to do then is
> > temporarily set the voxel width/height/depth to 1.0 (which is what
> > TransformJ has been assuming all along previously), then perform the
> > transformation, and afterwards put these properties back to their old
> > values.
> >
> > For consistency with the Affine plugin (the most generic plugin of the
> > package), two other changes were introduced. First, the Scale plugin by
> > default no longer rescales the voxel properties in order to retain the
> > physical image dimensions, but this is now an option (to be selected by
> the
> > user). Second, the Translate plugin now assumes the translation distances
> > to be in physical units (determined by the voxel properties), but an
> option
> > has been added (to be selected by the user) to take these distances as
> > voxel units.
> >
> > Have fun transforming your data!
> >
> > Erik
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>