http://imagej.273.s1.nabble.com/Exception-in-ImageJ-3D-Suite-after-update-to-imagescience-3-0-0-tp5014182p5014183.html
Thanks for your mail. I also discovered this problem when trying to
compile TANGO. There are just some minor changes, that should be fixed
soon. The source code of mcib3d and mcib3d-plugins are already available
> Dear Thomas, dear Erik,
>
> after the recent update of the ImageScience library [1,2] within Fiji,
> some plugins of the nice ImageJ 3D Suite seem to be broken: when I run
> 'Plugins > 3D > 3D Hysteresis Thresholding', the exception pasted
> below gets thrown [3].
>
> This is probably solved by changing the import statement in
> mcib_plugins/processing/Thresholder.java from
>
> import imagescience.utility.ImageScience;
> to
> import imagescience.ImageScience;
>
> but there might be many other places that have to be changed. I
> noticed that e.g. the imagescience.transform.Affine#run method had
> changed its signature from
> run(Image, Transform, int, boolean, boolean)
> to
> run(Image, Transform, int, boolean, boolean , boolean)
>
> @Erik: I would have appreciated if the transition to imagescience
> 3.0.0 had been a bit smoother, e.g. by marking some methods as
> deprecated before removing/changing them completely. That way, plugin
> developers could have reacted ahead of time and avoided breakage of
> their plugins for users.
>
> That said, it would be great if you could make the mcib3d-core source
> code available on github, so the community can contribute patches more
> easily :)
>
> Best regards,
> Jan
>
>
> [1]:
>
https://github.com/fiji/imagescience/commit/46f778a> (careful, the huge commit might stall your browser for a little while)
> [2]:
>
http://imagej.1557.x6.nabble.com/TransformJ-Update-td5014108.html>
> [3]:
> java.lang.NoClassDefFoundError: imagescience/utility/ImageScience
> at mcib_plugins.processing.Thresholder.hysteresis(Thresholder.java:79)
> at
> mcib_plugins.Hysteresis_Thresholding.hysteresis(Hysteresis_Thresholding.java:46)
> at
> mcib_plugins.Hysteresis_Thresholding.run(Hysteresis_Thresholding.java:34)
> at
> ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
> at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
> at ij.IJ.runUserPlugIn(IJ.java:214)
> at ij.IJ.runPlugIn(IJ.java:176)
> at ij.Executer.runCommand(Executer.java:132)
> at ij.Executer.run(Executer.java:62)
> at java.lang.Thread.run(Thread.java:619)
>
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>