Re: Montage java.lang.NegativeArraySizeException

Posted by ctrueden on Aug 31, 2015; 9:27pm
URL: http://imagej.273.s1.nabble.com/Montage-java-lang-NegativeArraySizeException-tp5014201p5014202.html

Hi Mark,

Your montage result image is probably too large; there is a 2 gigapixel
limit on plane size.

I added a FAQ entry:

http://imagej.net/FAQ#I_got_a_NegativeArraySizeException._What_caused_it.3F

Regards,
Curtis

On Mon, Aug 31, 2015 at 3:51 PM, Mark Chopping <
[hidden email]> wrote:

> I have my -batch mosaicing macro working... almost. Can anyone tell me
> what is causing the java "java.lang.NegativeArraySizeException" error
> below? The routines are called with:
>
> xvfb-run-safe ~/ImageJ/jre/bin/java -Xmx12000m -jar ~/ImageJ/ij.jar
> -ijpath ~/ImageJ -batch mymacro.ijm args > log
>
> The job is going to need a bit of memory but seems to have completed ok
> when the macro is run in GUI mode (only another 578 to go!). That is, when
> run from the GUI there were no errors and the large (1.4 Gb) output TIF was
> generated. However, when running with -batch the log reports:
>
> Mosaicing the 2120 (53 x 40) images...  [message from the macro, then]
> Image Sequence run; doing Make Montage...
> java.lang.NegativeArraySizeException
>         at ij.process.ByteProcessor.createProcessor(ByteProcessor.java:149)
>         at ij.plugin.MontageMaker.makeMontage2(MontageMaker.java:143)
>         at ij.plugin.MontageMaker.makeMontage(MontageMaker.java:122)
>         at ij.plugin.MontageMaker.run(MontageMaker.java:51)
>         at ij.IJ.runPlugIn(IJ.java:169)
>         at ij.Executer.runCommand(Executer.java:132)
>         at ij.Executer.run(Executer.java:65)
>         at ij.IJ.run(IJ.java:279)
>         at ij.macro.Functions.doRun(Functions.java:600)
>         at ij.macro.Functions.doFunction(Functions.java:95)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:227)
>         at ij.macro.Interpreter.doBlock(Interpreter.java:605)
>         at ij.macro.Interpreter.runFirstMacro(Interpreter.java:704)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:260)
>         at ij.macro.Interpreter.doStatements(Interpreter.java:215)
>         at ij.macro.Interpreter.run(Interpreter.java:112)
>         at ij.macro.Interpreter.run(Interpreter.java:82)
>         at ij.macro.Interpreter.run(Interpreter.java:93)
>         at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:153)
>         at ij.plugin.Macro_Runner.runMacroFile(Macro_Runner.java:137)
>         at ij.IJ.runMacroFile(IJ.java:130)
>         at ij.ImageJ.main(ImageJ.java:695)
>
> Does anyone know what is causing this?
>
>  Mark
>
>  Mark Chopping
>  Montclair State University
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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