Posted by
Jerome Mutterer-3 on
Sep 03, 2015; 6:10pm
URL: http://imagej.273.s1.nabble.com/open-text-image-sequence-tp4999149p5014236.html
Dear amirhosein999
You're getting this error message because the first two lines in your text
image image_01.txt do not contain the same number of elements.
Text images files have one line of values per horizontal line of pixels, so
every line is expected to contain exactly the same number of values.
Sincerely,
Jerome
On 3 September 2015 at 19:14, amirhosein999 <
[hidden email]>
wrote:
>
> Can you please go through details on how we should use this script in
ImageJ
> or Fiji. I tried to do that but couldn't. Maybe because I'm not much
> familiar with using macros in Fiji. Here is the things that I've done so
> far:
>
> I saved this script in text file (ImportTextImageSequence.txt):
> ------------------------------------------------------------
> dir = getDirectory("Choose directory");
> list = getFileList(dir);
> run("Close All");
> setBatchMode(true);
> for (i=0; i<list.length; i++) {
> file = dir + list[i];
> run("Text Image... ", "open=&file");
> }
> run("Images to Stack", "use");
> setBatchMode(false);
> ------------------------------------------------------------
> And then opened Fiji, Plugins>Macros>Install... and select above text
file.
> I saw a short message afterwards:
>
> "1 macro installed."
>
> Then I went to Plugins>Macros>Run... and again chose the .ijm installed
file
> (ImportTextImageSequence.ijm) at '/opt/Fiji/plugins/'. A new window was
> opened with title "Choose directory". It looks the macro is working, but I
> do not know which directory I should choose afterwards. I tried to choose
> the directory containing my text images (image_01.txt, image_02.txt, ...)
> but it gave me this error message:
>
> "Line 2 is not the same length as the first line."
>
> Also, when I tried to open by File>Import>Image Sequence..., I saw this
> message:
>
> "The folder does not apper to contain any TIFF, JPEG, BMP, DICOM, GIF,
> FITS or PGM files."
>
> which means that text image sequence is not installed at this part of Fiji
> at least.
>
> I searched a lot but could not find anyone has explained the procedure in
> details. It looks that just you guys have discussed about this macro
here. I
> would be thankful if you clarify this issue.
>
> P.S. My Fiji is updated at CentOS 7 and I used it earlier without any
> problems in image processing and also importing TIFF image sequences.
>
>
>
> --
> View this message in context:
http://imagej.1557.x6.nabble.com/open-text-image-sequence-tp4999149p5014235.html> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html--
Jerome Mutterer
CNRS - Institut de biologie moléculaire des plantes
12, rue du Général Zimmer
67084 Strasbourg Cedex
www.ibmp.cnrs.fr
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