Re: import text image sequence ?

Posted by ctrueden on
URL: http://imagej.273.s1.nabble.com/import-text-image-sequence-tp3682503p5014240.html

Hi Amit,

Since you asked this question in another thread, and said it is now
working, I assume all is well.

For the archives, the other thread is:
http://imagej.1557.x6.nabble.com/open-text-image-sequence-tp4999149p5014239.html

Regards,
Curtis

On Thu, Sep 3, 2015 at 12:13 PM, amirhosein999 <[hidden email]>
wrote:

> Can you please go through details on how we should use this script in
> ImageJ
> or Fiji. I tried to do that but couldn't. Maybe because I'm not much
> familiar with using macros in Fiji. Here is the things that I've done so
> far:
>
> I saved this script in text file (ImportTextImageSequence.txt):
> ------------------------------------------------------------
> dir = getDirectory("Choose directory");
> list = getFileList(dir);
> run("Close All");
> setBatchMode(true);
> for (i=0; i<list.length; i++) {
>  file = dir + list[i];
>  run("Text Image... ", "open=&file");
> }
> run("Images to Stack", "use");
> setBatchMode(false);
> ------------------------------------------------------------
> And then opened Fiji, Plugins>Macros>Install... and select above text file.
> I saw a short message afterwards:
>
>     "1 macro installed."
>
> Then I went to Plugins>Macros>Run... and again chose the .ijm installed
> file
> (ImportTextImageSequence.ijm) at '/opt/Fiji/plugins/'. A new window was
> opened with title "Choose directory". It looks the macro is working, but I
> do not know which directory I should choose afterwards. I tried to choose
> the directory containing my text images (image_01.txt, image_02.txt, ...)
> but it gave me this error message:
>
>     "Line 2 is not the same length as the first line."
>
> Also, when I tried to open by File>Import>Image Sequence..., I saw this
> message:
>
>     "The folder does not apper to contain any TIFF, JPEG, BMP, DICOM, GIF,
> FITS or PGM files."
>
> which means that text image sequence is not installed at this part of Fiji
> at least.
>
> I searched a lot but could not find anyone has explained the procedure in
> details. It looks that just you guys have discussed about this macro here.
> I
> would be thankful if you clarify this issue.
>
> P.S. My Fiji is updated at CentOS 7 and I used it earlier without any
> problems in image processing and also importing TIFF image sequences.
>
>
>
> --
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> Sent from the ImageJ mailing list archive at Nabble.com.
>
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