Re: cell lineage software
Posted by
Richard Mort-2 on
URL: http://imagej.273.s1.nabble.com/cell-lineage-software-tp5014257p5014259.html
Hi Jeremy,
It sounds like you are using Fucci? We wrote some semi-manual not very
sophisticated scripts to do this for following single cells. I can send
them if they might be useful. I also remember reading a paper that
described software based on ImageJ called FucciJ to do this but I don't
think the code ever appeared......
http://dev.biologists.org/content/suppl/2012/12/18/dev.086215.DC1/DEV086215.pdfBest
R
On 07/09/15 14:30, Jeremy Adler wrote:
> We are looking for software that tracks individual cells in a developing cell culture that includes dividing cells and then allows for measurements to be made from two channels in the nuclei.
> The nuclei are identifiable and will be the basis of the lineage tracing. The tracing needs to produce the location and outline of each nucleus at each timepoint and the outlines used to measure and output the mean intensity from two channels.
>
> Suggestions.
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html