Posted by
LMAnovitz on
Sep 08, 2015; 3:22pm
URL: http://imagej.273.s1.nabble.com/FIJI-Plugin-tp5014267.html
I am trying to load 3D X-ray CT images obtained at the APS into FIJI.
According to the APS website, this requires two files, labeled
GSETomo.txt and NetCDF_-3.jar
The description of both how the data are processed, and how to visualize it with ImageJ is at
http://cars9.uchicago.edu/software/idl/tomography.htmlUnfortunately, when I try to use FIJI’s Install Plugin feature it SAYS that GSETomo.txt has been installed, but
it does not show up under plugins, either immediately or after a restart.
Here is all that is in GSETomo.txt
run("Load NetCDF File");
run("XOR...", "value=1000000000000000 stack");
run("Calibrate...", "function=[Straight Line] unit=[Gray Value] text1=[0 65535] text2=[-32768 32767 ]");
run("Enhance Contrast", "saturated=0.5");
I am told this works on ImageJ, but not on FIJI, although I have not tried the former.
NetCDF does show up, and can be run, although it just yields a binary image.
Can anyone tell us how to fix this? Thank you.
—Larry Anovitz
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html