Posted by
Petkov, Daniel on
Sep 12, 2015; 4:37am
URL: http://imagej.273.s1.nabble.com/Nuance-im3-files-tp5014318p5014321.html
Thank you Ion,
While ImageJ + bio-format plugin opened .im3 file Fiji was unable to do it.
Which plugin one can use with ImageJ to automatically count nuclei? The ICTN plugin from Center for Bio-image Information seems to be corrupt and error message appears immediately after download.
Thank you for the help,
Daniel
________________________________
From: Ion C.Andronache <
[hidden email]>
Sent: Friday, September 11, 2015 1:36 PM
To:
[hidden email]; Petkov, Daniel
Subject: Re: Nuance .im3 files
Yes,
You can using Fiji (Fiji Is Just ImageJ
http://fiji.sc/Fiji). Plugin Bio-format coul be read and write .im3.
Or, download Bio-format plugin (
http://downloads.openmicroscopy.org/latest/bio-formats5.1/artifacts/bioformats_package.jar) and put it in plugin folder from ImageJ, and restart ImageJ.
You can read more about Bio-Format:
https://www.openmicroscopy.org/site/support/bio-formats5.1/supported-formats.html________________________________________________________________
Best wishes,
PhD Ion C. Andronache
Associate member, Research Centre for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest
Tehnical Redactor at Journal of Wetland Biodiversity
https://www.researchgate.net/profile/Ion_Andronache3/11.09.2015, 21:19, "Petkov, Daniel" <
[hidden email]>:
Hello,
Can ImageJ open and analyze data collected with Nuance and saved as (.im3) files?
Thank you for the help,
Daniel
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