Display intensity bit depth (Options>Appearance)

Posted by PEARSON Matthew on Sep 18, 2015; 12:23pm
URL: http://imagej.273.s1.nabble.com/Display-intensity-bit-depth-Options-Appearance-tp5014360.html

Hi all,

There is a setting in imageJ whereby you can set the default display intensity bit depth, found in Edit>Options>Appearance

By default its set to Automatic.  I've noticed that when i open Micro-Manager ome tiffs in ImageJ/FIJI that the automatic option clips the intensities to the data.  i.e. if my image has a minimum of 120 and a max of 5000 the brightness contrast can only be adjusted within that range.  I assume this is the correct behaviour of the "Automatic" clip to data min/max?

If i always acquire images on a 14bit camera and i want to set the display intensity bit depth to 14bit by default, how can i make ImageJ/FIJI remember this even when i quit the application?

Thanks for the help,

Matt


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Matt Pearson
Microscopy Facility
MRC Human Genetics Unit
IGMM
University of Edinburgh
Crewe Road
EH4 2XU




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