problem using BIOP vsi reader

Posted by Aryeh Weiss on Sep 21, 2015; 1:40pm
URL: http://imagej.273.s1.nabble.com/problem-using-BIOP-vsi-reader-tp5014387.html

I am trying  to help a colleague open his VSI files using ImageJ.
The file he sent me has a two parts:
Process_2297.vsi, which si 651kB in size.
_Process_2297_/stack1/frame_t_0_ets , which a 19.93GB in size.

When I run BIOP VSI reader, it comes up fine. I press "Select VSI" and
get the following two windows:

1. VSI Reader
This window contains data the macro needs. Please don't close it
Series ID :
/Users/amw1/Desktop/projects/itamarSimonCombing/shwarts/Process_2297.vsi
Image Folder : /Users/amw1/Desktop/projects/itamarSimonCombing/shwarts/
totSeries : 1
Has Label : No
Has Overview : No
Has Macro Image : No
Has Mask : No
Number Of Series : 0
Mode : Basic

2. Log
Relative Path, adding Path to Fiji
Full path to BIOPLib
:/Applications/local/fiji/Fiji.app/plugins/BIOP/BIOPLib.ijm
Empty Library. Adding BIOPLib Library.

I do not get the "Pick series" window which I found in the tutorial ppt  
presentation, in
http://biop.epfl.ch/downloads/VSIreader_tutov2.pdf

I have not been able to figure out how to display an image oy part of an
image.
I assume that I am missing something obvious, and any help in finding it
will be much appreciated.

--aryeh

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: [phone]


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