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Re: problem using BIOP vsi reader

Posted by Olivier Burri on Sep 22, 2015; 12:28pm
URL: http://imagej.273.s1.nabble.com/problem-using-BIOP-vsi-reader-tp5014387p5014398.html

Hi All,

> > Can you provide us with a link to download your file so we can check that
> everything is fine with it ?
> This should work
> https://filesender.huji.ac.il/filesender/?vid=37f1710c-1db5-3bc9-4a6e-
> 0000619d7dcd

Thanks I got the file and modified the way the VSI reader searches for series in the file structure to include the current case.
If interested, we were using the fact that our "real" series contained the magnification used during acquisition (10x, 4x, etc...) and we used that to find them.

The image you provided did not have this string and thus caused the issue. Now we are using the fact that intermediate sizes contain a # character, while keeping previous functionality.

You can download the latest VSI reader through our update site.

> > 3. Can you send us the informations you get from the windows
> > Bio-formats Plugins Configuration -> Log
> I can generate the log, but I cannot figure out how to copy what is in the
> window. There are no menu items to do that, and highlight followed by cmd-
> C does not work.

Aah the beauty of the Mac, can't copy things from the Macro Recorder either... Thanks for trying.

> One other thing -- the action bar plugin causes Fiji (maybe also ImageJ
> -- I dont know) to produce a grayed out help drop-down list.
> This also happened in the past, so I have to dig up the bug report (or file a
> new one).

Check the latest actionBar version, at least on our PCs this element does not appear anymore since a little while...

Hope it will work for you now.

All the best

Oli

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