http://imagej.273.s1.nabble.com/Re-Live-histograms-and-overlays-tp5014403p5014407.html
Thanks for the update. I checked out the replies and have some followup
questions. I replied on the forum itself.
> Hi Nagesh,
>
> > I posted this request on the new forum that Curtis Rueden mentioned
> > but am posting it also here in the hopes I can get help quicker.
>
> Note that the forum post is here:
>
http://forum.imagej.net/t/live-histograms-and-overlays/37>
> And it already has multiple replies.
>
> Regards,
> Curtis
>
> On Tue, Sep 22, 2015 at 7:05 AM, Nagesh Adluru <
[hidden email]>
> wrote:
>
> > nadluru <
http://forum.imagej.net/users/nadluru>
> > September 22
> >
> > Dear ImageJ community,
> >
> > I posted this request on the new forum that Curtis Rueden mentioned but
> am
> > posting it also here in the hopes I can get help quicker.
> >
> > Could you kindly help me with the following tasks
> >
> > *1) Live histogram of "Z axis profile":* I have a hyperstack of images
> and
> > I would like to see "live histograms" of the Z-axis profiles. I can plot
> > the profiles but would like to see their histograms and preferably live.
> > The standard histogram command in the Analyze menu does this for line
> > profiles but not for the Z-axis profiles.
> >
> > *2) Overlays of images with different LUTs and thresholds and
> > transparency:* I
> > have statistical maps and underlying brain images. I would like to
> > threshold the statistical maps and use some colorful LUTs and overlay
> them
> > on the brain images (which themselves are in grayscale) so that the zero
> > values in the statistical maps are transparent. Once overlaid I am
> hoping I
> > can use "magic montage" to generate various presentations from it. I have
> > the magic montage macro working but the getting the right overlays has
> been
> > really challenging.
> >
> > Thanks so much!
> > Nagesh
> >
> > --
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http://imagej.nih.gov/ij/list.html> >
>
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