Posted by
Thomas Boudier-3 on
URL: http://imagej.273.s1.nabble.com/Local-Thickness-for-anisotropic-voxels-tp5014494p5014512.html
Hi Ofra,
Yes, you're right, you can also use scale from Image/Scale or
TransformJ. TransformJ offers more interpolation options but both
functions should give quite similar results.
Best,
Thomas
On 01/10/2015 05:00, Ofra Golani wrote:
> Thanks Thomas,
>
> Making my stack isotropic is a good idea.
> However, I have image with voxel size 0.08*0.08*0.24 um, shouldn't I use TransformJ scale instead of Reslice
> I think the best would be to get image with 3 times the number of slices and voxel size 0.08*0.08*0.08.
>
> Thanks
> Ofra
>
> -----Original Message-----
> From: Thomas Boudier [mailto:
[hidden email]]
> Sent: Wednesday, September 30, 2015 4:00 AM
> Subject: Re: Local Thickness for anisotropic voxels
>
> Dear Ofra,
>
> I do not think there is a plugin for local thickness for anisotropic voxels. I can suggest you to have a look to 3D distance map that may give you the information you want, or simply make your image anisotropic :
>
> getVoxelSize(width, height, depth, unit); run("Reslice [/]...", "output=&width start=Top"); run("Reslice [/]...", "output=&width start=Top");
>
> Best,
>
> Thomas
>
> On 30/09/2015 06:44, Ofra Golani wrote:
>> Hi,
>>
>> Does the Local Thickness plugin assume isotropic voxels (voxel size is equal in all directions) ?
>> Is there any plugin available for calculating 3D local thickness for anisotropic voxels ?
>>
>> Thanks
>>
>> Ofra
>>
>>
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>> /***************************************************************/
>> Thomas Boudier, Associate Professor, UPMC,
>> Université Pierre et Marie Curie, Paris, France.
>> BioInformatics Institute (BII)/IPAL, Singapore.
>> /**************************************************************/
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Thomas Boudier, Associate Professor, UPMC,
Université Pierre et Marie Curie, Paris, France.
BioInformatics Institute (BII)/IPAL, Singapore.
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