images but you need to use library methods. Right now this option is not
accessible from the GUI. Have you tried Ilastik <
> Hello Zag and Ignacio,
>
> Weka surely works, but can it be applied to 3D images using 3D features?
> If yes, that would be great for other purposes, too.
>
> I often separate weft yarns from warp yarns by calculating local
> orientation using, e.g., the structure tensor method. Thresholding based on
> orientation separates the yarns very effectively.
>
> - Arttu
>
>
> >-----Original Message-----
> >From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> >Ignacio Arganda-Carreras
> >Sent: 7. lokakuuta 2015 18:24
> >To:
[hidden email]
> >Subject: Re: Yarns segmentation
> >
> >Hello Zag,
> >
> >You can give a try to the Trainable Weka Segmentation
> ><
http://fiji.sc/Trainable_Weka_Segmentation>.
> >
> >I converted your images to 8-bit and this is what I got using that plugin:
> >
> >[image: Inline image 1]
> >
> >These are my settings:
> >
> >[image: Inline image 2]
> >
> >I can send you the classifier I got if you want.
> >
> >Cheers!
> >
> >ignacio
> >
> >
> >On Wed, Oct 7, 2015 at 2:06 PM, gvozdin <
[hidden email]> wrote:
> >
> >> Hi all!
> >>
> >> I have a stack of images of textile composite from X-Ray mCT (about
> >> 1500 images, TIFF, 16bit). In this stack there are warp and weft yarns
> >> (you can see an exapmple in images below). So i need to separate warp
> >> yarns to one stack and weft yarns to the other for the further
> processing.
> >> Have anyone an idea how to do that?
> >> <
http://imagej.1557.x6.nabble.com/file/n5014571/Subvolume0490.png>
> >> <
http://imagej.1557.x6.nabble.com/file/n5014571/Subvolume0509.png>
> >>
> >>
> >>
> >> --
> >> View this message in context:
> >>
http://imagej.1557.x6.nabble.com/Yarns-segmentation-tp5014571.html> >> Sent from the ImageJ mailing list archive at Nabble.com.
> >>
> >> --
> >> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >
> >
> >
> >--
> >Ignacio Arganda-Carreras, Ph.D.
> >Ikerbasque Research Fellow
> >Departamento de Ciencias de la Computacion e Inteligencia Artificial
> Facultad
> >de Informatica, Universidad del Pais Vasco Paseo de Manuel Lardizabal, 1
> >20018 Donostia-San Sebastian
> >Guipuzcoa, Spain
> >
> >Phone : +34 943 01 73 25
> >Website:
http://sites.google.com/site/iargandacarreras/> ><
http://biocomp.cnb.csic.es/~iarganda/index_EN.html>
> >
> >--
> >ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>