Re: BioVoxxel odd behavior

Posted by gankaku on Oct 07, 2015; 6:05pm
URL: http://imagej.273.s1.nabble.com/BioVoxxel-odd-behavior-tp5014574p5014595.html

Hi Christine,

thanks for writing.
I am also running Win7 and tried what you mentioned in IJ 1.50c. I could
not confirm any problems.
Please make sure, that you copied the files into the correct folders (see
http://www.biovoxxel.de/development/) the toolset needs to be unpacked into
the >macros>toolsets folder   while the plugins need to be unpacked in the
plugins folder. Important is that the "ij_blob-1.4.0.jar" file is also in
the plugins folder. This is only necessary for the Watershed Irregular
Features command.

If you did all those steps correct, could you try to go to >Plugins
>BioVoxxel >Watershed Irregular Features and start it from there instead
from the "green cube" icon menu.

If the problem still persists I am a little clueless where it comes from.

Is only this one function a problem and do all the others run fine?

Please keep me on the loop, if the problem persists and I will try to
figure out what might be the problem. In that case you might as well post
the problem on forum.imagej.net
So we will potentially see if others also have had the same problem.

Kind regards,
Jan



2015-10-07 18:15 GMT+02:00 Christine Labno <[hidden email]>:

> Hi All,
>
> I'm seeing some odd behavior from the BioVoxxel Toolbox's Watershed
> irregular features command (and possibly other components, but didn't test
> all).
>
> When I use this feature through Fiji (IJ version 1.50b, Windows XP) it
> works as expected, but when I try to use it though ImageJ (version 1.48,
> 1.49 or 1.50c Windows XP or Windows 7) I get the error message
> "Unrecognized command: 'Watershed Irregular Features'".  Both versions of
> BioVoxxel are fresh downloads, one though the Fiji update site and one
> downloaded from http://www.biovoxxel.de/development/.  I even tried
> copying the Fiji version of the BioVoxxel .jars into ImageJ, but this
> didn't help.  Using exactly the same image each time.
>
> What am I doing wrong?
>
> Thanks!
> Christine
>
> --------------------------------------------
> Christine Labno, Ph.D.
> Asst. Technical Director
> Light Microscopy Core
> University of Chicago
> Office of Shared Research Facilities
> KCBD 1250 900 E. 57th St.
> [phone] (phone)
>
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>

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