Re: registration and alignment of stacks

Posted by Ignacio Arganda-Carreras-2 on Oct 11, 2015; 2:34pm
URL: http://imagej.273.s1.nabble.com/registration-and-alignment-of-stacks-tp5014578p5014604.html

Hello Mario,

Have you tried the Stitching plugins from Fiji?

http://fiji.sc/Stitching

ignacio

On Thu, Oct 8, 2015 at 10:09 AM, Mario Emmenlauer <[hidden email]>
wrote:

> Dear All,
>
> We have a user that creates image stacks from a large tissue. Each
> stack is 3D, and there are numerous stacks imaged in X/Y. Then the
> tissue is cut, and the next plane of stacks is imaged.
> How can I align and register the stacks? Each stack itself should
> internally remain fixed, but aligned with its surroundings.
>
> All the best,
>
>     Mario Emmenlauer
>
>
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--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencias de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : [phone]
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

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