http://imagej.273.s1.nabble.com/kawa-script-using-mpicbg-1-0-2-jar-ERROR-tp5014635p5014636.html
> Hello,
>
> kawa script using mpicbg_-1.0.2.jar
> -> ERROR
>
> "Linear Stack Alignment with SIFT" does not work when scripting using kawa [or
> clojure by the way]
>
> Note: the images we use are too big to send them here, but who might
> help probably knows the mpicbg source code and has images to
> test locally ...
>
> ~/lpdi/projects/kawa
> jars/
> ij-1.49v.jar
> ij.jar -> ij-1.49v.jar
> mpicbg_-1.0.2.jar
> mpicbg.jar -> mpicbg_-1.0.2.jar
> ij-core.scm
> ij$Mncore.class
>
> Session example:
>
> david@capac:~/lpdi/projects/kawa 67 $ export CLASSPATH=.:./jars/ij.jar:./jars/mpicbg.jar
> david@capac:~/lpdi/projects/kawa 68 $ kawa -Dplugins.dir=./jars
> #|kawa:1|# (import (ij-core))
> #|kawa:2|# (define iplus1 (ij-open "/usr/lpdi/projects/tests/mfer/vale/dipe/mosaic1/bf.png"))
> #|kawa:3|# (define iplus2 (ij-open "/usr/lpdi/projects/tests/mfer/vale/dipe/mosaic1/cpol.png"))
> #|kawa:4|# (ij-show iplus1)
> #|kawa:6|# (ij-show iplus2)
> #|kawa:7|# (ij-run "Images to Stack" "method=[Copy (center)] name=Stack title=[] use")
> #|kawa:9|# (ij-run "Linear Stack Alignment with SIFT" "initial_gaussian_blur=1.60 steps_per_scale_octave=3 minimum_image_size=64 maximum_image_size=1024 feature_descriptor_size=4 feature_descriptor_orientation_bins=8 closest/next_closest_ratio=0.92 maximal_alignment_error=25 inlier_ratio=0.05 expected_transformation=Translation interpolate")
>
> ->
> Class not found while attempting to run "SIFT_Align"
> java.lang.NoClassDefFoundError: mpicbg/models/TranslationModel2D
>
> Indeed, it is not in mpcibg.jar [see below]
>
> Anyone can give me some hint?
>
> Thanks,
> David
>
>
> david@capac:~/lpdi/projects/kawa/jars 358 $ jar tf mpicbg.jar
> META-INF/
> META-INF/MANIFEST.MF
> mpicbg/
> mpicbg/ij/
> mpicbg/ij/clahe/
> mpicbg/ij/plugin/
> Find_PointRoi.class
> LICENSE
> MOPS_ExtractPointRoi$1.class
> MOPS_ExtractPointRoi$Param.class
> MOPS_ExtractPointRoi.class
> mpicbg/ij/clahe/PlugIn.class
> mpicbg/ij/plugin/AbstractBlockFilter.class
> mpicbg/ij/plugin/AbstractBlockStatistics.class
> mpicbg/ij/plugin/AlignStacksWithLandmarks.class
> mpicbg/ij/plugin/DiffusionMask.class
> mpicbg/ij/plugin/ElasticAlign$1.class
> mpicbg/ij/plugin/ElasticAlign$2.class
> mpicbg/ij/plugin/ElasticAlign$Features.class
> mpicbg/ij/plugin/ElasticAlign$Param.class
> mpicbg/ij/plugin/ElasticAlign$PointMatches.class
> mpicbg/ij/plugin/ElasticAlign$Triple.class
> mpicbg/ij/plugin/ElasticAlign.class
> mpicbg/ij/plugin/ElasticMontage$1.class
> mpicbg/ij/plugin/ElasticMontage$2.class
> mpicbg/ij/plugin/ElasticMontage$Features.class
> mpicbg/ij/plugin/ElasticMontage$Param.class
> mpicbg/ij/plugin/ElasticMontage$PointMatches.class
> mpicbg/ij/plugin/ElasticMontage$Triple.class
> mpicbg/ij/plugin/ElasticMontage.class
> mpicbg/ij/plugin/Mean.class
> mpicbg/ij/plugin/MSEBlockFlow.class
> mpicbg/ij/plugin/MSEGaussianFlow.class
> mpicbg/ij/plugin/NormalizeLocalContrast.class
> mpicbg/ij/plugin/PMCCBlockFlow.class
> mpicbg/ij/plugin/RemoveOutliers.class
> mpicbg/ij/plugin/RemoveSaturated.class
> mpicbg/ij/plugin/SampleVariance.class
> mpicbg/ij/plugin/StandardDeviation.class
> plugins.config
> SIFT_Align$1.class
> SIFT_Align$Param.class
> SIFT_Align.class
> SIFT_ExtractPointRoi$1.class
> SIFT_ExtractPointRoi$Param.class
> SIFT_ExtractPointRoi.class
> SIFT_Test.class
> Stack_Rotate$1.class
> Stack_Rotate$GUI.class
> Stack_Rotate$MappingThread.class
> Stack_Rotate.class
> Transform_Affine.class
> Transform_MovingLeastSquaresMesh.class
> Transform_Perspective.class
> Transform_RegularizedAffine.class
> Transform_Rigid.class
> Transform_Roi.class
> Transform_Similarity.class
> Transform_SpringMesh$IllustrateThread.class
> Transform_SpringMesh$OptimizeThread.class
> Transform_SpringMesh.class
> META-INF/maven/
> META-INF/maven/mpicbg/
> META-INF/maven/mpicbg/mpicbg_/
> META-INF/maven/mpicbg/mpicbg_/pom.xml
> META-INF/maven/mpicbg/mpicbg_/pom.properties
>
> --
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