Re: BioVoxxel odd behavior

Posted by Kala Nair on Oct 14, 2015; 5:38am
URL: http://imagej.273.s1.nabble.com/BioVoxxel-odd-behavior-tp5014574p5014642.html

Hi

I am using image j for the first time. i wanted to do densitimetry for dab
stained sections individual neurons. it would be great if someone help me
how to g about it. which magnification i have to take images and what are
the steps to do.

Ms. Kala P. Nair
Junior Research Intern
C/O Dr. Vijayalakshmi Ravindranath
Center for Neuroscience
Indian Institute of Science
Bengaluru - 560012
E-Mail : [hidden email]
Ph No: [phone]

On Tue, Oct 13, 2015 at 9:54 PM, Christine Labno <[hidden email]> wrote:

> Hi Jan,
>
> Thanks for replying.
>
> You are correct, I missed the second step of downloading and unpacking the
> "plugins" section of BioVoxxel into my ImageJ Plugins folder.  Once I did
> that Watershed Irregular Features worked from both the green cube menu in
> the toolsets and the Plugins menu.
>
> Still waiting to get feedback from the colleague I'm working with who was
> having the same problem, but I think this fix should work for him too.
>
> Thanks for the help and the great toolset!
> Christine
> --------------------------------------------
> Christine Labno, Ph.D.
> Asst. Technical Director
> Light Microscopy Core
> University of Chicago
> Office of Shared Research Facilities
> KCBD 1250 900 E. 57th St.
> [phone] (phone)
>
> ________________________________________
> From: ImageJ Interest Group [[hidden email]] on behalf of BioVoxxel [
> [hidden email]]
> Sent: Wednesday, October 07, 2015 1:05 PM
> To: [hidden email]
> Subject: Re: BioVoxxel odd behavior
>
> Hi Christine,
>
> thanks for writing.
> I am also running Win7 and tried what you mentioned in IJ 1.50c. I could
> not confirm any problems.
> Please make sure, that you copied the files into the correct folders (see
> http://www.biovoxxel.de/development/) the toolset needs to be unpacked
> into
> the >macros>toolsets folder   while the plugins need to be unpacked in the
> plugins folder. Important is that the "ij_blob-1.4.0.jar" file is also in
> the plugins folder. This is only necessary for the Watershed Irregular
> Features command.
>
> If you did all those steps correct, could you try to go to >Plugins
> >BioVoxxel >Watershed Irregular Features and start it from there instead
> from the "green cube" icon menu.
>
> If the problem still persists I am a little clueless where it comes from.
>
> Is only this one function a problem and do all the others run fine?
>
> Please keep me on the loop, if the problem persists and I will try to
> figure out what might be the problem. In that case you might as well post
> the problem on forum.imagej.net
> So we will potentially see if others also have had the same problem.
>
> Kind regards,
> Jan
>
>
>
> 2015-10-07 18:15 GMT+02:00 Christine Labno <[hidden email]>:
>
> > Hi All,
> >
> > I'm seeing some odd behavior from the BioVoxxel Toolbox's Watershed
> > irregular features command (and possibly other components, but didn't
> test
> > all).
> >
> > When I use this feature through Fiji (IJ version 1.50b, Windows XP) it
> > works as expected, but when I try to use it though ImageJ (version 1.48,
> > 1.49 or 1.50c Windows XP or Windows 7) I get the error message
> > "Unrecognized command: 'Watershed Irregular Features'".  Both versions of
> > BioVoxxel are fresh downloads, one though the Fiji update site and one
> > downloaded from http://www.biovoxxel.de/development/.  I even tried
> > copying the Fiji version of the BioVoxxel .jars into ImageJ, but this
> > didn't help.  Using exactly the same image each time.
> >
> > What am I doing wrong?
> >
> > Thanks!
> > Christine
> >
> > --------------------------------------------
> > Christine Labno, Ph.D.
> > Asst. Technical Director
> > Light Microscopy Core
> > University of Chicago
> > Office of Shared Research Facilities
> > KCBD 1250 900 E. 57th St.
> > [phone] (phone)
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
>
>
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