http://imagej.273.s1.nabble.com/kawa-script-using-mpicbg-1-0-2-jar-ERROR-tp5014635p5014748.html
Dear Prof. Sidnei Paciornik,
thanks for your open criticism. I obviously fell victim to feeling
with a snappy reply. That's inappropriate and I should have just shut
question which had helped him go forward. Tone aside, I also explained
references. I occasionally get pissed if I get the impression that
somebody hijacks the helpful community to get their free lunch. I had
and bitch around. Sorry for that, to David, you, and the rest of the
> Dear all, but specially Stephan Saafeld,
> I was particularly shocked with the tone of some of your answers to doubts
> posted regarding the mpcibg code.
> I always took for granted that the nicest part of ImageJ and FIJI is the sense
> of community and the fact that we can always help and be helped. Given the size
> and diversity of this community, it is evident that all kinds of doubts, from
> basic to sophisticated, will appear.
> Granted, some developers might not want or have the time to answer to the doubts
> regarding the code he/she developed. But if he/she is available to answer,
> sentences such as “ if you want to keep doing what you propose which is clearly the result of not having spent sufficient time with it ” seem impatient or aggressive, and serve not purpose.
> I don´t think we are part of part of this community to “teach lessons” (in the
> repressive sense) to others. We are here to help and promote free software,
> science and knowledge.
> Sincerely Prof. Sidnei Paciornik Grupo de Análise de Imagens e Microscopia Digital
> DEQM - Departamento de Engenharia Química e de Materiais
> PUC-Rio
>
> Rua Marquês de São Vicente 225
> Prédio Leme, Sala 501L
> Gávea - Rio de Janeiro - RJ
> 22451-900 - Brasil
> tel: (55) (21)3527-1243
>
>
> On Mon, Oct 19, 2015 at 3:28 PM, Saalfeld, Stephan <
[hidden email] > wrote:
> Hi David,
>
> > (1) "Linear Stack Alignment with SIFT" now works, _but_, iff I display images
> on
> > the screen, which is required to call "Images to Stack":
> >
> > (a) I want to open images in memory only and built the stack myself,
> > example(s) [preferably kawa/clojure of course since I use kawa]
> > welcome;
> >
> > (b) "Linear Stack Alignment with SIFT" does not expect/accept a stack
> > argument, I would need, if possible, that you implement a version
> > that accept a stack instead of 'magically' grab the one fiji creates
> > when calling "Images to Stack" time:
> >
> > would that be possible?
> >
>
> No, it is unnecessary because the ImageJ and mpicbg API have lots of
> public methods that allow fine grained access to all its functionality.
> You will have to read about and learn it and then you will realize that
> both (1) and (2) are strange things to ask for ;).
>
> E.g., if you want to keep doing what you propose which is clearly the
> result of not having spent sufficient time with it, you could call
>
>
http://rsb.info.nih.gov/ij/ developer/api/ij/IJ.html#run-
> ij.ImagePlus-java.lang.String- java.lang.String-
>
> as making an ImagePlus from an ImageStack is as simple as
>
>
http://rsb.info.nih.gov/ij/ developer/api/ij/ImagePlus.
> html#ImagePlus-java.lang. String-ij.ImageStack-
>
> and
>
> > As you understood already, it is extremely important for us, I should say
> mandatory
> > actually, that absolutely everything happens in memory and no windows is/needs
> to
> > be opened during the execution of the script.
> >
>
> everything you're talking about happens in memory. If you do not want
> UI, use the API directly instead of plugins whose sole purpose is to
> provide a UI to some functions.
>
> Good luck,
> Stephan
>
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