Cell Counter macro question.

Posted by Lai Ding on Oct 28, 2015; 12:46am
URL: http://imagej.273.s1.nabble.com/Cell-Counter-macro-question-tp5014793.html

Hello everyone,

  I have a question regarding batch process on "Cell Counter" result files.

  Assume I have a bunch of images    image1.tif, image2.tif, ... , imagen.tif;  
  I use the cell counter to manually identify different cell types and save the markers as
  CellCounter_image1.xml, CellCounter_image2,.ml,  ..., CellCounter_imagen.xml;

  However I forgot to do the "measure" part in Cell Counter window to save the result table for each image. is there a way to write a macro batch process this?  The process seems simple, I can just open each .tif file, then open the corresponding .xml in CellCounter, do the "Measure" and save the result table as "xls" file.

 But the "Macro Recorder" does not record the Cell Counter function. is there a simple way to do the batch process?

 Thanks
Lai



--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html