Re: trying to open czi files always opens entire set of files in directory

Posted by Sebastian Rhode-5 on Nov 19, 2015; 7:15am
URL: http://imagej.273.s1.nabble.com/trying-to-open-czi-files-always-opens-entire-set-of-files-in-directory-tp5014974p5014979.html

Hi Guys,

maybe I observed a similar or at least related issue a non-lightsheet CZI file. The file ends with _pt68.czi.

When I try to open this one via BioFormats 5.1.6, BF first complains that the file is too large (65MB ???).  And if you than select the option Virtual stack the result has 68 Channels (but the CZI has only one channel). Also the OME_XML looks strange.

Now delete the _pt68 from the filename and try the same - and it works fine. The file has 1 channel and the size is 65MB. And the OME-XML looks OK.

Has anyone a clue if the is related to some issues in BioFormats 5.1.6 or anything else?

Cheers,  Sebi

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