Re: Standalone ImgLib2 usage

Posted by ctrueden on Nov 28, 2015; 4:31am
URL: http://imagej.273.s1.nabble.com/Standalone-ImgLib2-usage-tp5005746p5015042.html

Hi Avital,

> Is there a user friendly way of accessing methods from imgLib2? (a
> user friendly scripting wrapper would be awesome!)

The intent is for ImageJ Ops to fulfill that use case. It still has a long
way to go, but we did give a tutorial illustrating how to call Ops from
ImageJ scripts at the last ImageJ conference:

* https://imagej.github.io/presentations/2015-09-04-imagej2-scripting/
* https://vimeo.com/140098817
* https://vimeo.com/140098835

See also:

* http://imagej.net/Ops#Getting_started

That wiki page still needs a lot of fleshing out, though.

Regards,
Curtis

On Fri, Nov 27, 2015 at 1:36 PM, Avital Steinberg <[hidden email]
> wrote:

> Hi Albert,
> I just noticed your post from October. I can use ImageJ's Java API,
> ImageJ's
> macro language and Fiji's Javascript language. I will need to do 3D
> segmentation and some custom 3D alignments of 3D images, and imgLib2 seems
> to have some useful methods. However, it looks complicated to use.
>
> Is there a user friendly way of accessing methods from imgLib2? (a user
> friendly scripting wrapper would be awesome!) Or any other tool with built
> in segmentation and registration methods that would be possible to learn
> for
> someone who can program in Java?
>
> Thanks and happy Thanksgiving,
> Avital
>
>
>
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