Stress granule counter plugin error

Posted by Krs5 on
URL: http://imagej.273.s1.nabble.com/Stress-granule-counter-plugin-error-tp5015069.html

Dear list,

When running the Stress granule counter plugin (http://rsb.info.nih.gov/ij/plugins/stress_granule_counter/index.html) I get the following error:

ImageJ 1.50e; Java 1.8.0_60 [64-bit]; Windows 7 6.1; 82MB of 12231MB (<1%)
 
java.lang.NullPointerException
 at SG_counter.run(SG_counter.java:124)
 at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
 at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
 at ij.IJ.runUserPlugIn(IJ.java:214)
 at ij.IJ.runPlugIn(IJ.java:176)
 at ij.Executer.runCommand(Executer.java:136)
 at ij.Executer.run(Executer.java:65)
 at java.lang.Thread.run(Unknown Source)

As far as I can see it does not matter if I run Java 1.6 or 1.8, ImageJ or Fiji.

You can easily reproduce the error by opening hela-cells.tif, select all (Ctrl-A)  and run the plugin. It produces 2 images before the error occurs.  

Any suggestions?

Best wishes

Kees

Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif
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