Posted by
Avital Steinberg on
Dec 02, 2015; 8:00pm
URL: http://imagej.273.s1.nabble.com/Problems-with-Fiji-after-Fiji-update-tp5015097.html
Hi,
Ever since I updated Fiji, I'm having trouble using it. I uninstalled it
and reinstalled it, and uninstalled Java 7. I'm using mac 10.9.5, with
ImageJ version 2.0.0-rc-43/1.50e, build: 49b667f9aa.
It's running with Java 1.6.0_65 [64 bit].
Various scripts that used to work no longer work with this version of Fiji.
Here's an example:
importClass(Packages.ij.IJ);
importClass(Packages.ij.plugin.frame.RoiManager);
importClass(Packages.ij.io.OpenDialog);
importClass(Packages.ij.io.DirectoryChooser);
importClass(Packages.java.io.File);
importClass(Packages.ij.gui.GenericDialog);
importClass(Packages.ij.util.Tools);
importClass(Packages.ij.plugin.Duplicator);
importClass(Packages.ij.measure.ResultsTable);
importClass(Packages.ij.ImagePlus);
importClass(Packages.ij.process.ImageProcessor);
importClass(Packages.ij.util.ArrayUtil);
importClass(Packages.ij.gui.Overlay);
importClass(Packages.ij.plugin.filter.ParticleAnalyzer);
importClass(Packages.ij.gui.Roi);
importClass(Packages.ij.plugin.RGBStackMerge);
importClass(Packages.ij.process.ImageConverter);
importPackage(java.awt);
dir = "/Users/avitalsteinberg/Javascript /RFP wontRun input/";
dirOutput = dir.substring(0, dir.length - 1)+ "_output/";
if(!File(dirOutput).exists()){
File(dirOutput).mkdir();
}
IJ = IJ();
rm = RoiManager(); // initiating the ROI manager in hidden mode.
if (rm==null)
IJ.error("ROI Manager is not found");
rt = ResultsTable(); // Here, the default is hidden mode.
rt.setValue("yCentroid", 0, 1);
rt.show();
The debugger gives the following error message: (even though the import
exits, highlighted blue)
Can't find method ij.measure.ResultsTable.show()
Any idea what can be done to get Fiji to work well with my computer?
Thanks,
Avital
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