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Re: Problems with Fiji after Fiji update

Posted by Avital Steinberg on Dec 02, 2015; 8:30pm
URL: http://imagej.273.s1.nabble.com/Problems-with-Fiji-after-Fiji-update-tp5015097p5015100.html

Actually, I get exactly the same bug when I run ImageJ 1.50e with 1.8.0_66,
so the issue won't be solved by updating Java.

Any idea what can explain this?

Thanks,
Avital






On Wed, Dec 2, 2015 at 10:27 PM, Avital Steinberg <[hidden email]
> wrote:

> Hi Brandon,
> I have Java 8 installed, but I was unable to get it to work with Fiji.
> Fiji still works with Java 6.
>
> How would I get Fiji to work with Java 8?
>
> Thanks,
> Avital
>
> On Wed, Dec 2, 2015 at 10:12 PM, Brandon Hurr <[hidden email]>
> wrote:
>
>> I don't know for sure, but try running it with Java 8. I have update 51,
>> 60, and 66 and they all work fairly well, especially after the 1.50e
>> update.
>>
>> https://www.java.com/en/download/
>>
>> On Wed, Dec 2, 2015 at 12:07 PM, Avital Steinberg <
>> [hidden email]
>> > wrote:
>>
>> > Hi,
>> > Ever since I updated Fiji, I'm having trouble using it. I uninstalled it
>> > and reinstalled it, and uninstalled Java 7. I'm using mac 10.9.5, with
>> > ImageJ version 2.0.0-rc-43/1.50e, build: 49b667f9aa.
>> >
>> > It's running with Java 1.6.0_65 [64 bit].
>> >
>> > Various scripts that used to work no longer work with this version of
>> Fiji.
>> > Here's an example:
>> >
>> > importClass(Packages.ij.IJ);
>> > importClass(Packages.ij.plugin.frame.RoiManager);
>> > importClass(Packages.ij.io.OpenDialog);
>> > importClass(Packages.ij.io.DirectoryChooser);
>> > importClass(Packages.java.io.File);
>> > importClass(Packages.ij.gui.GenericDialog);
>> > importClass(Packages.ij.util.Tools);
>> > importClass(Packages.ij.plugin.Duplicator);
>> > importClass(Packages.ij.measure.ResultsTable);
>> > importClass(Packages.ij.ImagePlus);
>> > importClass(Packages.ij.process.ImageProcessor);
>> > importClass(Packages.ij.util.ArrayUtil);
>> > importClass(Packages.ij.gui.Overlay);
>> > importClass(Packages.ij.plugin.filter.ParticleAnalyzer);
>> > importClass(Packages.ij.gui.Roi);
>> > importClass(Packages.ij.plugin.RGBStackMerge);
>> > importClass(Packages.ij.process.ImageConverter);
>> > importPackage(java.awt);
>> >
>> > dir = "/Users/avitalsteinberg/Javascript /RFP wontRun input/";
>> >
>> > dirOutput = dir.substring(0, dir.length - 1)+ "_output/";
>> >
>> > if(!File(dirOutput).exists()){
>> >     File(dirOutput).mkdir();
>> > }
>> >
>> > IJ = IJ();
>> > rm = RoiManager(); // initiating the ROI manager in hidden mode.
>> > if (rm==null)
>> >      IJ.error("ROI Manager is not found");
>> > rt = ResultsTable(); // Here, the default is hidden mode.
>> > rt.setValue("yCentroid", 0, 1);
>> > rt.show();
>> >
>> > The debugger gives the following error message: (even though the import
>> > exits, highlighted blue)
>> > Can't find method ij.measure.ResultsTable.show()
>> >
>> > Any idea what can be done to get Fiji to work well with my computer?
>> >
>> > Thanks,
>> > Avital
>> >
>> > --
>> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>> >
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
>

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