Re: cannot import AnalyzeSkeleton

Posted by Jan Eglinger on Dec 27, 2015; 4:07pm
URL: http://imagej.273.s1.nabble.com/cannot-import-AnalyzeSkeleton-tp5015289p5015291.html

Hi Aryeh,

 > from skeleton_analysis import AnalyzeSkeleton_
 > ImportError: No module named skeleton_analysis

The package was renamed in a recent commit:

https://github.com/fiji/AnalyzeSkeleton/commit/5587966

included in AnalyzeSkeleton_-3.0.0 shipped with Fiji now.


The following should work now:

     from sc.fiji.analyzeSkeleton import AnalyzeSkeleton_


This shouldn't interfere with BoneJ if you import the correct class.

Unfortunately, this breaking change for existing scripts wasn't
announced anywhere publicly before being uploaded to the update site.

Jan


On 27.12.15 13:23, Aryeh Weiss wrote:

> I have a python script that depends on the AnalyzeSkeleton_() class
>
> This script was working properly last week when I tested the fix to the
> memory
> problem we had with Jython. However, today, the script cannot import
> this class.
>
> Here is the error:
> from skeleton_analysis import AnalyzeSkeleton_
> ImportError: No module named skeleton_analysis
>
> And here is the line that generates this error:
> from skeleton_analysis import AnalyzeSkeleton_
> (which is actually  clear from the error message)
>
> Here is what I find with the Command Finder:
>
> Analyze Skeleton (2D/3D)     Analyze>Skeleton
> sc.fiji.analyzeSkeleton.AnalyzeSkeleton_
> /Applications/local/fiji/Fiji.app/plugins/AnalyzeSkeleton_-3.0.0.jar
>
>
> And with the updater I also find that plugins/AnalyzeSkeleton_jar is up
> to date.
>
> Why is the import failing?
>
> Thanks in advance.
> --aryeh
>

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