Re: cannot import AnalyzeSkeleton

Posted by Aryeh Weiss on Dec 27, 2015; 4:29pm
URL: http://imagej.273.s1.nabble.com/cannot-import-AnalyzeSkeleton-tp5015289p5015292.html

Hi Jan

Thank you for your rapid reply.

On 27/12/2015 6:16 PM, Jan Eglinger wrote:

> Hi Aryeh,
>
> > from skeleton_analysis import AnalyzeSkeleton_
> > ImportError: No module named skeleton_analysis
>
> The package was renamed in a recent commit:
> https://github.com/fiji/AnalyzeSkeleton/commit/5587966
> included in AnalyzeSkeleton_-3.0.0 shipped with Fiji now.
>
> The following should work now:
>
>     from sc.fiji.analyzeSkeleton import AnalyzeSkeleton_
>

Works as advertised.

--aryeh

>
> This shouldn't interfere with BoneJ if you import the correct class.
>
> Unfortunately, this breaking change for existing scripts wasn't
> announced anywhere publicly before being uploaded to the update site.
>
> Jan
>
>
> On 27.12.15 13:23, Aryeh Weiss wrote:
>> I have a python script that depends on the AnalyzeSkeleton_() class
>>
>> This script was working properly last week when I tested the fix to the
>> memory
>> problem we had with Jython. However, today, the script cannot import
>> this class.
>>
>> Here is the error:
>> from skeleton_analysis import AnalyzeSkeleton_
>> ImportError: No module named skeleton_analysis
>>
>> And here is the line that generates this error:
>> from skeleton_analysis import AnalyzeSkeleton_
>> (which is actually  clear from the error message)
>>
>> Here is what I find with the Command Finder:
>>
>> Analyze Skeleton (2D/3D)     Analyze>Skeleton
>> sc.fiji.analyzeSkeleton.AnalyzeSkeleton_
>> /Applications/local/fiji/Fiji.app/plugins/AnalyzeSkeleton_-3.0.0.jar
>>
>>
>> And with the updater I also find that plugins/AnalyzeSkeleton_jar is up
>> to date.
>>
>> Why is the import failing?
>>
>> Thanks in advance.
>> --aryeh
>>
>

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: [phone]

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