Re: cannot import AnalyzeSkeleton

Posted by Aryeh Weiss on Dec 28, 2015; 11:12am
URL: http://imagej.273.s1.nabble.com/cannot-import-AnalyzeSkeleton-tp5015289p5015295.html

Hi Curtis,

On 28/12/2015 3:55 AM, Curtis Rueden wrote:

> Hi Aryeh,
>
> > Here is what I find with the Command Finder:
> >
> > Analyze Skeleton (2D/3D)        Analyze>Skeleton
> sc.fiji.analyzeSkeleton.AnalyzeSkeleton_
> /Applications/local/fiji/Fiji.app/plugins/AnalyzeSkeleton_-3.0.0.jar
>
> Your instinct to check the Command Finder was good—you can see the
> "sc.fiji.analyzeSkeleton" prefix above. You can always use this
> approach to determine the right invocation for a plugin class.
>

Thank you for following up.
I did not properly understand the significance of that column.
Now I do, and it will be very useful.

Best regards,
--aryeh

> Regards,
> Curtis
>
> On Sun, Dec 27, 2015 at 10:29 AM, Aryeh Weiss <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Hi Jan
>
>     Thank you for your rapid reply.
>
>     On 27/12/2015 6:16 PM, Jan Eglinger wrote:
>
>         Hi Aryeh,
>
>         > from skeleton_analysis import AnalyzeSkeleton_
>         > ImportError: No module named skeleton_analysis
>
>         The package was renamed in a recent commit:
>         https://github.com/fiji/AnalyzeSkeleton/commit/5587966
>         included in AnalyzeSkeleton_-3.0.0 shipped with Fiji now.
>
>         The following should work now:
>
>             from sc.fiji.analyzeSkeleton import AnalyzeSkeleton_
>
>
>     Works as advertised.
>
>     --aryeh
>
>
>         This shouldn't interfere with BoneJ if you import the correct
>         class.
>
>         Unfortunately, this breaking change for existing scripts
>         wasn't announced anywhere publicly before being uploaded to
>         the update site.
>
>         Jan
>
>
>         On 27.12.15 13:23, Aryeh Weiss wrote:
>
>             I have a python script that depends on the
>             AnalyzeSkeleton_() class
>
>             This script was working properly last week when I tested
>             the fix to the
>             memory
>             problem we had with Jython. However, today, the script
>             cannot import
>             this class.
>
>             Here is the error:
>             from skeleton_analysis import AnalyzeSkeleton_
>             ImportError: No module named skeleton_analysis
>
>             And here is the line that generates this error:
>             from skeleton_analysis import AnalyzeSkeleton_
>             (which is actually  clear from the error message)
>
>             Here is what I find with the Command Finder:
>
>             Analyze Skeleton (2D/3D)     Analyze>Skeleton
>             sc.fiji.analyzeSkeleton.AnalyzeSkeleton_
>             /Applications/local/fiji/Fiji.app/plugins/AnalyzeSkeleton_-3.0.0.jar
>
>
>             And with the updater I also find that
>             plugins/AnalyzeSkeleton_jar is up
>             to date.
>
>             Why is the import failing?
>
>             Thanks in advance.
>             --aryeh
>
>
>
>
>     --
>     Aryeh Weiss
>     Faculty of Engineering
>     Bar Ilan University
>     Ramat Gan 52900 Israel
>
>     Ph:  972-3-5317638
>     FAX: [phone]
>
>     --
>     ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: [phone]


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