Re: Screening of images in stack import - ignoring certain

Posted by burt46 on Jan 04, 2016; 11:29pm
URL: http://imagej.273.s1.nabble.com/Screening-of-images-in-stack-import-ignoring-certain-tp5015306p5015322.html

For anyone searching a similar solution, the following worked for me for an RGB Image

  threshold = 25;
  dir = getDirectory("Choose folder");
  run("Image Sequence...", "open=&dir sort");
  for (i=nSlices; i>=1; i--) {
    setSlice(i);
    getRawStatistics(nPixels, mean);
    msg = "";
    if (mean>threshold) {
       run("Delete Slice");
       msg = "(deleted)";
    }
    print(i, mean, msg);
  }
  resetThreshold;