Mitochondrial analysis on z-stack

Posted by Василий Попков on Jan 14, 2016; 12:13pm
URL: http://imagej.273.s1.nabble.com/Mitochondrial-analysis-on-z-stack-tp5015379.html

Good time of a day, friends.

I have a z-stack of tmre colored mitochondria in a cell (red channel). I've
found an article, which is dealing with mitochondria morphology via
algorithms, but I can't really apply it - Im not good enough programmer
(well, I'm not at all).

So. It is quite easy to detect mitochondria on each slice with some kind of
"analyze particles" or similar things. BUT. There are same mitochondria on
different slices. Are there any plugins which can understand that "this and
this are the same mitochondria as on previous slice, this is new one"? And
somehow to analyze it. Volume will be ideal, but at least something.

Thank you a lot for you time. Any suggestions of what available plugins I
can use will be very helpful.

Vasily

Link to z-stack and article
https://www.dropbox.com/sh/af5hopz04ca8d73/AABIvB2SPf17I8h6rfNvbhS1a?dl=0

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