Posted by
ram prasad on
Jan 21, 2016; 10:58am
URL: http://imagej.273.s1.nabble.com/Open-multiple-images-in-a-sequence-batch-tp5015419p5015421.html
Thanks Volker! That seems to have solved my problem atleast partially. When
I include that line and run the macro as a batch process it opens the image
for me to make a selection but then after processing the first image it
throws the following message instead of opening the next one.
ImageJ 1.48v; Java 1.6.0_24 [64-bit]; Linux 3.13.0-48-generic; 36MB of
2257MB (1%)
java.lang.NullPointerException
at ij.process.ColorProcessor.<init>(ColorProcessor.java:30)
at ij.ImagePlus.setupProcessor(ImagePlus.java:715)
at ij.ImagePlus.getFileInfo(ImagePlus.java:1780)
at ij.io.FileSaver.<init>(FileSaver.java:34)
at ij.IJ.saveAsTiff(IJ.java:1736)
at ij.IJ.saveAs(IJ.java:1665)
at ij.plugin.BatchProcessor.processFolder(BatchProcessor.java:200)
at ij.plugin.BatchProcessor.run(BatchProcessor.java:91)
at ij.IJ.runPlugIn(IJ.java:169)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:662)
How should I go about this?
Cheers,
Ram
On Thu, Jan 21, 2016 at 11:37 AM, Volker Baecker <
[hidden email]
> wrote:
> Hello,
> if you add
>
> setBatchMode(false);
>
> as the first command in your macro, you might be able to run it with
> Process>Batch>Macro...
>
> Volker
>
> ram prasad:
> > Dear All,
> >
> > I have a macro that I would like to run as a batch process. I
> > expect it to open the file, let me draw a line and then do a few
> > operations based on that line. The macro works well on individual
> > files. however, when I try to run it as a batch process, instead of
> > opening the file it seems to proceed straight to the selection
> > step.
> >
> > I think this is happening because the macro isn't waiting until the
> > image is open to proceed to next step. I tried "wait" command but
> > had no luck. Also, when I googled about it, I found examples on
> > opening image sequence but that is not what I'm looking for. I want
> > it to work on all the image files in my directory, sequentially
> > without me having to select my file through the open dialog box.
> >
> > Please, find the macro attached. Any help would be appreciated.
> >
> > Regards, Ram
> >
> > -- ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
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