With the rise in Stack processing - are there similar mechanisms to record, remember, and report back on the depth of voxels? Simplest would be “getVoxelSize(unit, voxelWidth, voxelHeight, voxelDepth)” - but…I’ll take what I can get.
Pressing my luck - it’s common for slices in a stack to be less regularly spaced than, say, rows in an image. Is there any mechanism for mapping slice number -> z value?
> On Feb 1, 2016, at 07:45, BenDehap <
[hidden email]> wrote:
>
> Hello Michael,
>
> First thank you for your answer, someone give me a simple way to resolve my
> problem as following :
>
>
> getPixelSize (unit, pixelWidth, pixelHeight);
> if (unit=="microns"){
> x=pixelWidth;}
> else exit ("No calibration");
>
> but i seen that the method you propose is widely used on forums.
> Would it be possible to show me an example of code using "x" for the value
> of the pixel witdh and "image1" for the name of my image.
>
> I don't know if you have the time to do it, but i'm a coding beginner and i
> feell a bit lost.
>
> Thanks anyway.
>
> Ben
>
>
> 2016-02-01 11:15 GMT+01:00 Michael Entrup [via ImageJ] <
>
[hidden email]>:
>
>> Hi Ben,
>>
>> each ImagePlus [1] has a method called ``getCalibration()``. It returns
>> the Calibration [2] instance of the ImagePlus. The Calibration Object
>> contains all the methods you need. ``getUnit()`` returns a String to
>> check if the unit is µm. ``getX(double x)`` converts a pixel value into
>> a physical unit.
>>
>> Best regards
>> Michael
>>
>> [1]:
http://rsb.info.nih.gov/ij/developer/api/ij/ImagePlus.html>> [2]:
http://rsb.info.nih.gov/ij/developer/api/ij/measure/Calibration.html>>
>>
>> On 31.01.2016 20:37, BenDehap wrote:
>>
>>> Hello,
>>>
>>> I have a simple problem and reading different forums didn't help me to
>>> resolve it.
>>>
>>> I need for my ImageJ Plugins to attribute to a variable "x" the value of
>> the
>>> pixel size in "µm" used in my pre-calibrated "image1".
>>>
>>> It would really help me if someone can help me on this case.
>>>
>>> Thanks very much.
>>>
>>> Ben
>>>
>>>
>>>
>>> --
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