> Dear Christian, dear all,
>
> You're getting this error message because FigureJ makes use of the
> imagescience.jar library that provides high quality image transforms. To be
> more precise, it uses the Affine.run method, the signature of which changed
> at some point in imagescience. From your error message, I'd guess that
> you've upgraded imagescience, but not figurej to their latest versions.
> As you're running Fiji, the easiest way to upgrade is through the updater,
> just make sure to subscribe to the current update sites that provides
> ImageScience and FigureJ:
> *ImageScience*
http://sites.imagej.net/ImageScience/> *IBMP-CNRS*
http://sites.imagej.net/Mutterer/If you're not using the
> updater for some reason, you can get the latest versions of the needed file
> from:
>
>
http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:figurej:start#installation_details_for_imagej>
> Sincerely,
>
> Jerome
>
>
>
>
> On 5 February 2016 at 13:10, Christian Goosmann <
>
[hidden email]> wrote:
>
> > Dear List
> > FigureJ seems to be broken. When trying to send an image to a panel, it
> > throws an exception with the message:
> >
> > Exception in thread "AWT-EventQueue-0" java.lang.NoSuchMethodError:
> >
> imagescience.transform.Affine.run(Limagescience/image/Image;Limagescience/transform/Transform;IZZ)Limagescience/image/Image;
> > at utilities.MyImageMath.getPixels(MyImageMath.java:53)
> > at FigureJ_Tool.transferROIDataToPanel(FigureJ_Tool.java:451)
> > at FigureJ_Tool.cleanGUIandTransferROI(FigureJ_Tool.java:1984)
> > at
> >
> FigureJ_Tool$FigureControlPanel$22.actionPerformed(FigureJ_Tool.java:1195)
> > at
> > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
> > at
> >
> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
> > at
> >
> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
> > at
> > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
> > at
> >
> javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
> > at
> > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
> > at java.awt.Component.processMouseEvent(Component.java:6289)
> > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
> > at java.awt.Component.processEvent(Component.java:6054)
> > at java.awt.Container.processEvent(Container.java:2041)
> > at java.awt.Component.dispatchEventImpl(Component.java:4652)
> > at java.awt.Container.dispatchEventImpl(Container.java:2099)
> > at java.awt.Component.dispatchEvent(Component.java:4482)
> > at
> > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
> > at
> > java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
> > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
> > at java.awt.Container.dispatchEventImpl(Container.java:2085)
> > at java.awt.Window.dispatchEventImpl(Window.java:2478)
> > at java.awt.Component.dispatchEvent(Component.java:4482)
> > at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
> > at java.awt.EventQueue.access$000(EventQueue.java:85)
> > at java.awt.EventQueue$1.run(EventQueue.java:603)
> > at java.awt.EventQueue$1.run(EventQueue.java:601)
> > at java.security.AccessController.doPrivileged(Native Method)
> > at
> >
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
> > at
> >
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
> > at java.awt.EventQueue$2.run(EventQueue.java:617)
> > at java.awt.EventQueue$2.run(EventQueue.java:615)
> > at java.security.AccessController.doPrivileged(Native Method)
> > at
> >
> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
> > at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
> > at
> >
> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
> > at
> >
> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
> > at
> >
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
> > at
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
> > at
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
> > at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
> >
> > Then it behaves like described in Alessandros message from October 2013
> on
> > this list:
> >
> > "...the selection is not inserted. On the main ImageJ panel there is an
> >> indication "Scaling Image" with three asterisks moving left-right and
> I'm
> >> assuming that the software is trying to scale the image in order to fit
> it
> >> into the frame but even after one hour, nothing happens."
> >>
> >
> > I am using an up to date FIJI on Win7-32, no difference on another
> machine
> > with the 64 bit version. Only an older Version of FIJI last updated March
> > 2014 still has FigureJ working. I tried manually adding imagescience.jar
> to
> > the plugins folder (as suggested by Jerome in reply to Alessandro in
> 2013)
> > but no difference.
> > Any hints?
> > Christian
> >
> > --
> > ---
> > Christian Goosmann
> > Mikroskopie
> > Max-Planck-Institut für Infektionsbiologie
> > Campus Charité Mitte
> > Charitéplatz 1
> > 10117 Berlin
> > Tel.: +49 30 28460 388
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
>
>
> --
> Jerome Mutterer
> CNRS - Institut de biologie moléculaire des plantes
> 12, rue du Général Zimmer
> 67084 Strasbourg Cedex
> www.ibmp.cnrs.fr
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>